Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30044
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.97 
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_55024| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)                    26   9.0  

>SB_49232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 212 ERHSHSHGVVSHIYATVNLSRWQRSTS*CV 123
           +R SH+H +  ++   + LSRW R  S CV
Sbjct: 158 QRTSHAHQISRNMSINLTLSRWLRKMSMCV 187


>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 56  DRGGVKRRTRVDSLRHASTACSEHINSCSAA 148
           D GG+KR + V+++R AS     H  SC AA
Sbjct: 341 DYGGLKRSSGVNTVRPASDPQVTHEKSCEAA 371


>SB_55024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 181 HTYTLQLISRVGSGARVNVFAASSGRVSKTVNTRPPLNASA 59
           H++    I  VG+ +R N+FA++S R S  +++  P  A A
Sbjct: 27  HSFGRSSIRTVGASSRSNLFASTS-RKSVVISSSQPEKAQA 66


>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
          Length = 532

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 181 HTYTLQLISRVGSGARVNVFAASSGRVSKTVNTRPPLNASA 59
           H++    I  VG+ +R N+FA++S R S  +++  P  A A
Sbjct: 27  HSFGRSSIRTVGASSRSNLFASTS-RKSVVISSSQPEKAQA 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,388
Number of Sequences: 59808
Number of extensions: 169175
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)