Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30043
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 109 2e-24
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 43 3e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 32 0.43
SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32) 32 0.56
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 31 1.3
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 31 1.3
SB_44846| Best HMM Match : UME (HMM E-Value=2.6) 30 2.3
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 29 3.0
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 29 5.3
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.0
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.0
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 28 9.2
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.2
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 109 bits (263), Expect = 2e-24
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
+AHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S +
Sbjct: 66 IAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLN 125
Query: 688 KVVEAIKTNFNERYE 732
++E++KTN+NER++
Sbjct: 126 NLIESVKTNYNERFD 140
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +3
Query: 324 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAHL 503
LFK+L KYRPET +P ++ G N +T LVE KKA L
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 109 bits (263), Expect = 2e-24
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFS 687
+AHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S +
Sbjct: 157 IAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLN 216
Query: 688 KVVEAIKTNFNERYE 732
++E++KTN+NER++
Sbjct: 217 NLIESVKTNYNERFD 231
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/49 (63%), Positives = 39/49 (79%)
Frame = +1
Query: 127 NTLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLHVV*KCP 273
N L EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L+ K P
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVP 77
Score = 67.7 bits (158), Expect = 9e-12
Identities = 35/83 (42%), Positives = 43/83 (51%)
Frame = +3
Query: 255 RRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXX 434
+RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 72 QRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGK 131
Query: 435 RPNTIRSGTNTVTKLVEKKKAHL 503
+P ++ G N +T LVE KKA L
Sbjct: 132 KPMLVKYGINHITSLVENKKAQL 154
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDRAS 681
+A D +P+E++L LP LC VPY V+ K+ LG V R C N S +
Sbjct: 115 MAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVNEGSQLKPQ 174
Query: 682 FSKVVEAIK 708
+ AI+
Sbjct: 175 IQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 508 LAHDVDPIELVLFLPALCRKMGVPYCIVKGK 600
LA DV PI+++ +P +C +PY V K
Sbjct: 120 LAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
Length = 325
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 431 KEAQHHPIRHKHSHQAGREEEGALVVSLMM-LIPLSWFSSCQRYAVK 568
+ Q H + S Q R+ G +S+++ L +SWF SC Y +K
Sbjct: 207 RRIQTHNTNSRQSSQDKRQRSGTRTISIVIGLFVISWFPSCVYYFLK 253
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -3
Query: 637 CMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQWDQHHERDH 503
C+ C +Q H G + MVRP+ G EPA W + +H
Sbjct: 1190 CLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMWFHYSASEH 1236
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 418 MSLHQRGPTPSDPAQTQSPSWSRRRRRTCGLAHDVDPIELVLFLPALCRKMGVP 579
MSL G PS+PA+ + P S R R++ L ++ P P L +K G P
Sbjct: 212 MSLPFSGTLPSEPARVEQPPSSARSRKSGNLYDELRPYT----APELPKKSGKP 261
>SB_44846| Best HMM Match : UME (HMM E-Value=2.6)
Length = 133
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 117 EDREY-SLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEGCTSRRLKVP 272
++R Y SL E W G G++ ++ V PH P+G T ++ +P
Sbjct: 80 KERAYTSLVRPILEYVRWHGLHIPRGILARWNLSSVEPHALPQGITKEQVALP 132
>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 467 SHQAGRE-EEGALVVSLMMLIPLSWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAH 640
SH+A E A +SL+ + ++ + W+Y AL+ SPA+V++ ++ H
Sbjct: 49 SHEATEELARQAEKMSLLQVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSGH 107
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1
Query: 553 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERY 729
A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQY 1262
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 475 SWSRRRRRTCGLAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 612
S +R C L+++ D V + ALC + G+P V +LG
Sbjct: 48 SLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 689 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 588
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 437 PLWWRLIFLGNLSFSSFPQPLFPG 366
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 589 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERY 729
VKGK+ LG +KT L + V R S S VVEA ++ E+Y
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQY 1134
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 205 VRWPKYIRIQRQKAVLHVV*KCPLRSTNLPRHWTRLQLRAFSRFWRN 345
V WP + I A LH K P ++ + R L ++S FW N
Sbjct: 1991 VLWPSHCVIDSWGAELHQDLKAPEKNNIITRKGFDSDLDSYSAFWNN 2037
>SB_56738| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 869
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 233 SARRLYFTSSESAPSDQPIYPDTGQDYS*GPFQDFGEIQA*D*SSQERE 379
S +RL SE P D P P D PF DF ++ SQ+ E
Sbjct: 528 SEKRLETMQSEFYPVDSPDVPPAEDDDYKTPFDDFDDVPDLSPKSQKAE 576
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 533 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHAWL*QMWSL 667
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,576,202
Number of Sequences: 59808
Number of extensions: 489848
Number of successful extensions: 1489
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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