Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30042X
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        93   1e-19
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        93   1e-19
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        73   2e-13

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 41/79 (51%), Positives = 52/79 (65%)
 Frame = +1

Query: 256 DSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPALGVKVDAKPGR 435
           DSY++P+ ++   +FRLL+VD               TA DVIHS  +PAL VK+DA PGR
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGR 188

Query: 436 LNHTNFFINRPGIFFGQCS 492
           LN T FFI RPG+F+GQCS
Sbjct: 189 LNQTGFFIKRPGVFYGQCS 207



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%)
 Frame = +2

Query: 2   ITILVRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXX 181
           I + V +LII     K   R+L++G ++E+I TIIPA  LIFIA                
Sbjct: 42  IIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDP 101

Query: 182 XITLKSIGHQ*Y*RYEYSDFNN 247
            +T+K++GHQ Y  YEYSD+ +
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQS 123


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 41/79 (51%), Positives = 52/79 (65%)
 Frame = +1

Query: 256 DSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPALGVKVDAKPGR 435
           DSY++P+ ++   +FRLL+VD               TA DVIHS  +PAL VK+DA PGR
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGR 188

Query: 436 LNHTNFFINRPGIFFGQCS 492
           LN T FFI RPG+F+GQCS
Sbjct: 189 LNQTGFFIKRPGVFYGQCS 207



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%)
 Frame = +2

Query: 2   ITILVRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXX 181
           I + V +LII     K   R+L++G ++E+I TIIPA  LIFIA                
Sbjct: 42  IIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDP 101

Query: 182 XITLKSIGHQ*Y*RYEYSDFNN 247
            +T+K++GHQ Y  YEYSD+ +
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQS 123


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 34/74 (45%), Positives = 44/74 (59%)
 Frame = +1

Query: 256 DSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPALGVKVDAKPGR 435
           DSY++P+ ++   +FRLL+VD               TA DVIHS  +PAL VK+DA PGR
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGR 188

Query: 436 LNHTNFFINRPGIF 477
           LN T FFI +   F
Sbjct: 189 LNQTGFFIKKTWSF 202



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/82 (39%), Positives = 46/82 (56%)
 Frame = +2

Query: 2   ITILVRYLIISLFFNKYINRFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXX 181
           I + V +LII     K   R+L++G ++E+I TIIPA  LIFIA                
Sbjct: 42  IIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDP 101

Query: 182 XITLKSIGHQ*Y*RYEYSDFNN 247
            +T+K++GHQ Y  YEYSD+ +
Sbjct: 102 ALTIKAVGHQWYWSYEYSDYQS 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,053,994
Number of Sequences: 59808
Number of extensions: 152384
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)