Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30040
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 27   8.8  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  27   8.8  

>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 356 SVYFRSAFTNFRSSSQRGLVEYQGM 282
           S YF + FTN    SQ+G++E QG+
Sbjct: 60  SDYFYAMFTNDMLESQKGVIELQGL 84


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 453
           IY++  T T+  +   ++ T +QR H C+F+
Sbjct: 242 IYLLFITSTRRSVSYEHM-TRLQRSHFCYFV 271


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 453
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 359 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 388


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 453
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 280 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 309



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 453
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 402 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 431


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 361 IYIICATETKWRIKIRYLPTLIQRGHLCHFI 453
           +Y++  T T+  +   ++ T +QR H C+F+
Sbjct: 161 VYLLLITSTRRSVSYEHM-TRLQRSHFCYFV 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,197
Number of Sequences: 59808
Number of extensions: 303388
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)