Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30039
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_1976| Best HMM Match : FYVE (HMM E-Value=0.6)                       28   7.5  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    27   9.9  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 99   LCNAITNCCRHHLHLLSFVNDHYVTLFILSSTQ*SSFLY*YINLQWFLWMFRITT 263
            LC  +  CC H   +L++   H +TL   S+   S+     ++L      +RI T
Sbjct: 1997 LCTLMVTCCVHDGEMLTYFFHHVLTLLTYSNVSPSASNVISVSLVMAFCYYRILT 2051


>SB_1976| Best HMM Match : FYVE (HMM E-Value=0.6)
          Length = 157

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 VAQSVLGIYLYFFVLPRSTGWPLQRTV 27
           ++ +V   YLYFF  PRS  W L R V
Sbjct: 127 LSSAVRFYYLYFFNWPRSLLWELSRLV 153


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 73  FLSCHDLPVGHYNEQYDV 20
           FL CH  P+G YNE+  +
Sbjct: 317 FLLCHQYPIGVYNEEMTI 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,325,504
Number of Sequences: 59808
Number of extensions: 421875
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)