Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30007
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               31   1.0  
SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32272| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38)           28   7.3  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)                 27   9.7  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = +2

Query: 305 YEYSAPDGTPVKFTYTADENGYQPQS-----ELLPVAPPMPEAIRRAIDYILAHPPKTET 469
           Y  ++P  +P   +Y+     Y P S      L P  PP+P +I   +     H   T  
Sbjct: 568 YSPTSPSYSPTSPSYSPSSPSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATPPHLQSTAQ 627

Query: 470 VKKL*IQKIQSTTPPPKKS 526
            +   +  +   TPPP++S
Sbjct: 628 PRPTTVPPL-PPTPPPRQS 645


>SB_14808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 368 YQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKK 478
           Y+ QS  LP  PP P A+   +D++ AH P + T+++
Sbjct: 54  YRHQSSSLPTLPP-PVALIN-LDFVAAHSPHSPTIRR 88


>SB_32272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 201 DGFSFGYETDNGISAQSSDP*RKLIISMFSPSKVNMNTLRLTEPL*SSRI 350
           +G+  GY T  GIS+ +  P   +  S+ S S   ++T   ++PL  SRI
Sbjct: 106 NGYHTGYSTSTGISSTTLTP--SVTCSLTSSSAFPLSTTISSQPLYRSRI 153


>SB_34932| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.38)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +2

Query: 299 GQYEYSAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKK 478
           GQ +     GTP      A  +    Q+   P   P P+A R A+    +  P     +K
Sbjct: 92  GQLKSIGTPGTPSSTLGQATPSSQPDQAVATPDEKPKPKARRPAVKRQRSQGPSMAQQRK 151

Query: 479 L*IQKIQSTTPPPKKSGLYF 538
           L  Q++Q     P+++G+ +
Sbjct: 152 L-QQQLQKQYLQPQQAGMLY 170


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 314 SAPDGTPVKFTYTADENGYQPQSELLPVAPPMPEAIRRAIDYILAHPPKTETVKKL*IQK 493
           +AP+ T      TA E    P++ L P A   PEA   A   ++   P+T T   L    
Sbjct: 477 TAPETTTASLVTTAPETTTAPEATLAPEATTAPEA---ATASLVTTAPET-TTASLATTA 532

Query: 494 IQSTTPP 514
            ++TT P
Sbjct: 533 PETTTAP 539


>SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 224 N*QWNQRSII*SLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADE 361
           N +W    ++ S  ++D++    IQ ++   +PDG  V FT T+D+
Sbjct: 133 NLEWRVDYVLGS-SELDDVKEPEIQLKFNKGSPDGEVVAFTVTSDK 177


>SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)
          Length = 196

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 224 N*QWNQRSII*SLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTADE 361
           N +W    ++ S  ++D++    IQ ++   +PDG  V FT T+D+
Sbjct: 133 NLEWRVDYVLGS-SELDDVKEPEIQLKFNKGSPDGEVVAFTVTSDK 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,889
Number of Sequences: 59808
Number of extensions: 299302
Number of successful extensions: 753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)