Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10508
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       33   0.17 
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   2.1  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   2.1  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   2.1  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   28   4.9  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   4.9  
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)                       27   6.5  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   6.5  
SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)                    27   8.6  
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 27   8.6  

>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -3

Query: 277 CVVDQSESVDLPPPKF-VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLR 101
           C  D + S++ PPPKF +     ++T  V L +L  F  + V++           T C  
Sbjct: 6   CCNDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQVTNCFV 65

Query: 100 ANNLLVMNLRVRIVAVP 50
           A +L V ++ V + A+P
Sbjct: 66  A-SLAVTDILVAVFAMP 81


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 206 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 60
           +I  N  +F   + DLG+A  +   +  + +H L R Q+VGH  A   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 305 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 397
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 278  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 394
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 305 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 397
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 232  FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 113
            F+  PN   ++  TL    ++ S  R+ V+ +VG PGC  S T
Sbjct: 904  FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 182 FGELLTDLGLADGWFSWM*NIANHLLA 102
           FGEL+ D G +   F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 302 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 391
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
          Length = 132

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 365 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKRIS 252
           Y  CA   S      G+ C +A  + PD   RRS R S
Sbjct: 62  YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNRSS 99


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 229 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 80
           V+  NT  ++ +T     +F  I +++T     C++S TI +  NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186


>SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/73 (23%), Positives = 28/73 (38%)
 Frame = +3

Query: 45  SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGF 224
           SEG     ++K +   +   KQ   +  +PG     + +   K  K Y++        GF
Sbjct: 158 SEGPPRPTSKKPVLKLVSQEKQPAIEGQNPGTTKEIQNDEEGKATKKYEIPAYAYIELGF 217

Query: 225 KTNFGGGKSTDSL 263
               G GK   +L
Sbjct: 218 NDEMGSGKKPATL 230


>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 217 SVSRQTSEVASQLIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAH 351
           + S +  + A   I+   +H R    VR  +QVS   P++++  H
Sbjct: 256 NTSVEKLQAAHDKIKVKPKHRRPPSRVRTSSQVSTEPPIKKDPTH 300


>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 973

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 127 KTSQTICLRANNLLVMN-LRVRIVAVPSLILNYFQ*FGVYTH 5
           K S  + LR +NL   + +  RIV  P   ++Y + FG+Y H
Sbjct: 245 KRSPKMILRLHNLCWRHAMSCRIVPTPPKAISYRKLFGIYFH 286


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 293  KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 397
            KFEPKH+  +     KKR +RK+  E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,358
Number of Sequences: 59808
Number of extensions: 301157
Number of successful extensions: 898
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)