Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10484
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           28   3.5  
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)               27   8.1  

>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 318  GYKRGFRNGVRS*DRLGAGRERDAKRDKSSGGKWCRRAGGR 196
            G++RG   G R  +R G  RERD       GG W  RAG R
Sbjct: 1002 GFERG--GGWRDQERGGFDRERDRHDRDGGGGAW--RAGDR 1038


>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
          Length = 905

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 279 DRLGAGRERDAKRDKSSGGKWCRRAGGRCWWTSRSSLRD 163
           DR+G GR+RD  R   S G   R   GR    +++  RD
Sbjct: 219 DRIGRGRDRDNNRTGRSRGHRDRYQEGRFSREAKNRCRD 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,819,656
Number of Sequences: 59808
Number of extensions: 112947
Number of successful extensions: 291
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)