Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10466
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      28   6.5  
SB_32735| Best HMM Match : DUF465 (HMM E-Value=1.7)                    28   6.5  
SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)                   27   8.6  
SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)                   27   8.6  
SB_42499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 393 PQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 497
           P  ++   I  LT  L+  +E+F+E IKE K+ ++
Sbjct: 215 PGMSYKQGIYALTIRLTTLKEKFEEGIKESKKEIE 249


>SB_32735| Best HMM Match : DUF465 (HMM E-Value=1.7)
          Length = 87

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 408 MNAITDLTSELSLFEERFKEAIKEKKEGLD 497
           ++ + +L +  S  EE +KEA+K K E +D
Sbjct: 2   LSEVEELRARCSKLEELYKEAVKAKDEAVD 31


>SB_42224| Best HMM Match : rve (HMM E-Value=8.6e-14)
          Length = 661

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -3

Query: 186 IQQERFECRRC-----IHDYKFVIKFFGLKILQRIPNKAIFSLFYQT 61
           ++Q R+  + C     I D+K ++K FG + L  I N  +F L  +T
Sbjct: 149 LEQTRYFTQGCDNLVIITDHKHLVKIFGDRTLDEISNSRLFRLKQRT 195


>SB_13803| Best HMM Match : rve (HMM E-Value=8.6e-14)
          Length = 1447

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = -3

Query: 186  IQQERFECRRC-----IHDYKFVIKFFGLKILQRIPNKAIFSLFYQT 61
            ++Q R+  + C     I D+K ++K FG + L  I N  +F L  +T
Sbjct: 935  LEQTRYFTQGCDNLVIITDHKHLVKIFGDRTLDEISNSRLFRLKQRT 981


>SB_42499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 306 PKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 473
           PKVL  G+     L+    LR    S+ TP+E   +   D   +   F+ +  E++
Sbjct: 63  PKVLILGHSFVRRLKSDISLRFDHRSNNTPEEKDSSNAQDEIHQTPQFQVQIPESV 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,530
Number of Sequences: 59808
Number of extensions: 247963
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)