Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10456
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 154 6e-38
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 100 2e-21
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4) 32 0.55
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 30 1.7
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 30 1.7
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 30 2.2
SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61) 29 2.9
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 29 2.9
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 29 5.1
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 5.1
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.8
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 154 bits (374), Expect = 6e-38
Identities = 68/85 (80%), Positives = 76/85 (89%)
Frame = +3
Query: 255 TTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 434
T DV GDEYNVE VD PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFP
Sbjct: 154 TDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFP 213
Query: 435 GYDAESKKFNAEVHRAHIFGLHVAD 509
GYD+ESK F+AEVHR HIFG HVA+
Sbjct: 214 GYDSESKDFSAEVHRNHIFGKHVAE 238
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/72 (61%), Positives = 59/72 (81%)
Frame = +2
Query: 509 YMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 688
YMRSL ++DE+S+KRQFS YIK GV AD+IE IYK AH+AIRADP HKK E KKD V+ K
Sbjct: 239 YMRSLAEEDEESYKRQFSAYIKNGVDADSIEGIYKAAHQAIRADPVHKKAE-KKD-VQLK 296
Query: 689 RWNKRQLTLAER 724
R+++++++ +R
Sbjct: 297 RFHRKKMSRQQR 308
Score = 68.1 bits (159), Expect(2) = 2e-21
Identities = 28/59 (47%), Positives = 40/59 (67%)
Frame = +1
Query: 79 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXDTLYTG 255
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG +YTG
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTG 153
Score = 52.4 bits (120), Expect(2) = 2e-21
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +1
Query: 1 VVQDKNKYNTPKYRLIVRLSNKDVTCQ 81
+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 32 ITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +3
Query: 255 TTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 416
T +V GDEYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 59 TEEVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
Score = 78.6 bits (185), Expect = 5e-15
Identities = 37/75 (49%), Positives = 49/75 (65%)
Frame = +1
Query: 82 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXDTLYTGQQ 261
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG +YTG +
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 262 MSQVMNTMLNLSTMD 306
+V N+ ++D
Sbjct: 61 --EVNGDEYNVESID 73
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 512 MRSLEQDDEDSFKRQFSKYI----KLGVTADAIEAIYKKAHEAIRADPSHKKKELKK 670
++ EQ ++ FK++ + Y+ K G T D IE KK H D HK+ KK
Sbjct: 345 VKFFEQKQKEEFKKEETDYLDVFKKGGTTKDKIEKKDKKKHHKKHKDKEHKEHHHKK 401
>SB_35415| Best HMM Match : BRF1 (HMM E-Value=4.4)
Length = 408
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 584 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRQLTL 715
T D + + K+ EA + K+ ++D ++K+WNKRQ L
Sbjct: 38 TEDRMNHLMKQKTEAAKKQRISNKQARQEDQEERKKWNKRQAVL 81
>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 584 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRQLTL 715
T D + + K+ EA + K+ ++D ++K+WNKRQ L
Sbjct: 712 TEDRMNHLMKQKTEAAKKQRICNKQARQEDQEERKKWNKRQAVL 755
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 406 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 284
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 406 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 284
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 524 EQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELK--KDSVKQKRWN 697
+QD+ F QF K +KLG+ D++ K + +R S EL KD V + + N
Sbjct: 361 DQDNYKKFYEQFGKNLKLGIHEDSVNR--AKLADLLRYHSSSSGDELTSLKDYVTRMKEN 418
Query: 698 KRQL 709
++ +
Sbjct: 419 QKDI 422
>SB_45590| Best HMM Match : Syntaxin (HMM E-Value=0.61)
Length = 315
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 584 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRQLTLAE 721
T DAI+A K+ +E D + K +K K + W + ++ LA+
Sbjct: 232 TCDAIKAYLKQVYEEEFYDDIEQSKPIKDPKSKDQLWTEVEMILAQ 277
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 524 EQDDEDSFKRQFSKYIKLGV--TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWN 697
E+DD+D F+ Q +K G T + K A E A P+ K+KE KK K+K +
Sbjct: 348 EKDDDDDFELQLAKPEPEGKKGTKRGKKKTSKDATEESEA-PNKKRKEKKKKKKKKKASS 406
Query: 698 KRQLT 712
K + T
Sbjct: 407 KIEPT 411
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 512 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEA--IYK--KAHEAIRADPSHKKKELKKDSV 679
M+ + +DS KR+ + GV I+ + K +AH+ A P +KKK KK+
Sbjct: 255 MKKGSKQAKDSAKRKTTVVTSAGVIKKPIKLAKVMKMIRAHKLTPAKPVNKKKNDKKEQT 314
Query: 680 KQK 688
+QK
Sbjct: 315 QQK 317
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 403 RPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVT 263
+P S P P T A V R PT+ +P P L +PVT
Sbjct: 85 QPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFFQQQPLVPTPVT 131
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 43 LIVRLSNKDVTCQVAYSRIEGD-HIVC 120
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 91 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 189
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 451 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 353
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,849,734
Number of Sequences: 59808
Number of extensions: 531448
Number of successful extensions: 1665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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