Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10452
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 7e-25
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 3.7
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09) 29 4.9
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14) 28 6.5
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5) 28 6.5
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9) 28 8.6
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 111 bits (266), Expect = 7e-25
Identities = 51/84 (60%), Positives = 59/84 (70%)
Frame = +1
Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
V KGATYGKP + GVN+LK R+L+S+AEE +SYWV QDS YKYFEVI+
Sbjct: 75 VPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIM 134
Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
VDP HKAIRRD +INWI HKH
Sbjct: 135 VDPFHKAIRRDARINWICKPTHKH 158
Score = 108 bits (260), Expect = 4e-24
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = +2
Query: 35 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGF 59
Score = 61.3 bits (142), Expect = 8e-10
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +3
Query: 510 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 644
E+RGLT+AG +RG+ KGH Y++ G SRRA W R NTL LRR R
Sbjct: 160 ELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 92 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 205
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 599 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
P A + +S+ + T+G SR T + C C + L +G+
Sbjct: 190 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIEPNVMLTMGT 234
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 599 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
P A + +S+ + T+G SR T + C C + L +G+
Sbjct: 302 PNGAQETIAISIPIDNTTGLTASRGYTIRIECYCIDTNVMLTMGT 346
>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
Length = 536
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 578 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
+ +S+ + T+G SR TT + C C L +G+
Sbjct: 364 IAISLPIDNTTGLTASRGYTTRIECYCIDPNAMLTMGT 401
>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
Length = 498
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 599 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
P A + +S+ + T+G SR T + C C + L +G+
Sbjct: 287 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIDPNVMLTMGT 331
>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
Length = 351
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -1
Query: 578 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 465
+ +S+ + T+G SR T + C C + L +G+
Sbjct: 71 IAISLPIDNTTGLTASRGYTVRIGCYCIDSNVMLTMGT 108
>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 385 SSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLTL-AATTSHAD 224
++THG+ + V Q IE G +HG W H W LT+ TT+H +
Sbjct: 71 TTTHGERWSLPWAVAQPRIE-----EDGPYHGRWHNHPWRKMVLTMGGGTTTHGE 120
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 385 SSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLTL-AATTSHAD 224
++THG+ + V Q IE G +HG W H W LT+ TT+H +
Sbjct: 159 TTTHGERWSLPWAVAQPRIE-----EDGPYHGRWHNHPWRKMVLTMGGGTTTHGE 208
>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 349
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 226 PRATWWPQASVAKGATYGKPKSHGVNQLKPTRNLQSIAE 342
PR TWW + G T+ K K + K T++ + +E
Sbjct: 60 PRDTWWAEHQAKCGGTFSKVKEPDNYKKKKTKSKDNNSE 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,595,098
Number of Sequences: 59808
Number of extensions: 473648
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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