Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10447X
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 84 4e-17
SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015) 28 3.8
SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 27 6.7
SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41) 27 6.7
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 27 8.8
SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 27 8.8
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041) 27 8.8
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 84.2 bits (199), Expect = 4e-17
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +1
Query: 244 VQVSRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 423
+ ++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE PG
Sbjct: 181 IDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPG 240
Query: 424 GHLG 435
GHLG
Sbjct: 241 GHLG 244
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +3
Query: 3 APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKSRRST 182
APTK WR+WH ARGH IEKI E+PLV++D T
Sbjct: 100 APTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVT 159
Query: 183 R 185
+
Sbjct: 160 K 160
>SB_21126| Best HMM Match : 7tm_1 (HMM E-Value=0.0015)
Length = 195
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 117 GHIIEKIPELPLVVADKSRRSTRPNRLSSS*GASRHG 227
G + K P LP + KSR++ R LSS SR G
Sbjct: 152 GLVCSKAPSLPRTSSSKSRKTGRKATLSSRLFGSRRG 188
>SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 219 LRRLRKMTACLVLLISWTCPLQPG 148
LR + K+T C +L +WT P PG
Sbjct: 36 LRLVPKLTKCERMLSTWTIPTDPG 59
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 119 SSSLNERWDAGSSNRCRQGRSPLSEVDA 36
S + E+WD G S R G+S +SE A
Sbjct: 255 SEKMVEKWDVGFSKRFIVGQSKMSEAKA 282
>SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41)
Length = 361
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 270 TSTKTRDLYTLRISDHALRRLRKMTACLVLLI 175
+ T T+ + LR++ L+R RK A LVL+I
Sbjct: 232 SQTPTQGVQVLRVNVRKLQRKRKAVAILVLII 263
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -2
Query: 411 LQEVQLVNIQELHTGDVAEGASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTRDLYTLRI 232
L ++ + + + H ++ E LVE S L + + LT+ KT DLY ++
Sbjct: 379 LSKLWFLQLSKNHLTELPENFGNLTSLVELRLDSNQLSSLPASFANLTNVKTLDLYRNKL 438
Query: 231 SD 226
S+
Sbjct: 439 SE 440
>SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 43 TSDSGERPWRQRLLLPASQRSFRLE-DTLLKRFPSFPWL*RTS 168
T D+G R WR+ + A +RS L+ D ++ SFP + TS
Sbjct: 214 TRDTGSREWRRTVKEAAQKRSTGLKNDGVIPVGTSFPLVKHTS 256
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 253 SRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 345
+R RAGK K+R +R+ P+ FN + +
Sbjct: 496 ARCRAGKNKLRQAKRLNVPNPVKDFNMAENI 526
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 1 SPPRSPGGVGTVASTSDSGERPWRQ 75
+PP + GGVG AS + + E+ W Q
Sbjct: 144 TPPDATGGVGVKASYNFNYEKSWTQ 168
>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
Length = 187
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 161 RYNQGKLGNLFNNVSSSLNERWDAGSSNRCRQG 63
R + G+LG + N+ + W GSSN QG
Sbjct: 93 RESFGRLGEISKNLEVAAQLNWATGSSNTSFQG 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,121,783
Number of Sequences: 59808
Number of extensions: 257629
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -