Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10446
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   161   4e-40
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   9e-23
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 101   7e-22
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 80   2e-15
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.20 
SB_7012| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   7.4  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  161 bits (392), Expect = 4e-40
 Identities = 76/92 (82%), Positives = 79/92 (85%)
 Frame = +2

Query: 233 MLVCMSATAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAY 412
           +  CM  TA+P L+EPVY  EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAY
Sbjct: 704 LYACM-LTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAY 762

Query: 413 LPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 508
           LPV ESFGFTADLRS TGGQAFPQCVFDHWQV
Sbjct: 763 LPVMESFGFTADLRSKTGGQAFPQCVFDHWQV 794



 Score =  159 bits (387), Expect = 2e-39
 Identities = 71/87 (81%), Positives = 77/87 (88%)
 Frame = +3

Query: 6   FGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHT 185
           FGPEGTGPN+LVD SKGVQYLNEIKDSVVAGFQWA KEG + +EN+RGVRFNI+DVTLH 
Sbjct: 627 FGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVRGVRFNIHDVTLHA 686

Query: 186 DAIHRGGGQIIPTTRRCLYACLLLLSP 266
           DAIHRGGGQIIPT RR LYAC+L   P
Sbjct: 687 DAIHRGGGQIIPTARRVLYACMLTAKP 713



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +1

Query: 508 LPGEPCEPQSKPYNVVQETRKRKGLKEGLP 597
           LPG+  +  S P  VV  TRKRKGLKEG+P
Sbjct: 795 LPGDVHDLASMPGQVVANTRKRKGLKEGIP 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  104 bits (249), Expect = 9e-23
 Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
 Frame = +3

Query: 6   FGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 173
           FGPE TGPNILVD +   +     LN +KDS++ GFQWA +EG + +E +R V+F I D 
Sbjct: 603 FGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDEPIRNVKFKILDA 662

Query: 174 TLHTDAIHRGGGQIIPTTRRCLYACLLLLSPVSWSLYIFVK 296
            +  + IHRGGGQIIPT RR  Y+  L+ +P     Y FV+
Sbjct: 663 VIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVE 703



 Score =  101 bits (242), Expect = 7e-22
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = +2

Query: 257 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 436
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 691 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 750

Query: 437 FTADLRSNTGGQAFPQCVFDHWQV 508
           F  DLR++T GQAF   VF HWQ+
Sbjct: 751 FETDLRTHTQGQAFCLSVFHHWQI 774


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  101 bits (242), Expect = 7e-22
 Identities = 43/84 (51%), Positives = 59/84 (70%)
 Frame = +2

Query: 257 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 436
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60

Query: 437 FTADLRSNTGGQAFPQCVFDHWQV 508
           F  DLR++T GQAF   VF HWQ+
Sbjct: 61  FETDLRTHTQGQAFCLSVFHHWQI 84


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
 Frame = +2

Query: 260 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 436
           QP RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466

Query: 437 FTADLRSNTGGQAFPQCVFDHWQ 505
           F+ ++R  T G A PQ +F HW+
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWE 489



 Score = 34.3 bits (75), Expect = 0.11
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 17/77 (22%)
 Frame = +3

Query: 6   FGPEGTGPNILVDCSKGV------QYLNE-----------IKDSVVAGFQWAAKEGVMAE 134
           FGP GTGPNIL++           Q L+E              S+V+GFQ     G +  
Sbjct: 185 FGPRGTGPNILLNRDPDYPRPSIWQCLDENAGYKAGEYKPYDSSIVSGFQMTTLSGPLCA 244

Query: 135 ENLRGVRFNIYDVTLHT 185
           E L GV F+I  + L+T
Sbjct: 245 EPLMGVCFSIEHLVLNT 261


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 320 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 472
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_7012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 465 ADRPSRSAYSTI--GRSPWRTVRTSEQALQRCTGNEKEE 575
           ADR  R AY  I  G S WR      +    C G E EE
Sbjct: 16  ADRKERLAYDKIICGASTWREQNRRGKRQSNCVGEEDEE 54


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 501 QWSNTHCGKACPPVLE--RKSAVKPNDSL 421
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 268 TGLSSSRHAYKHLLVVGMIWPPPLWMA 188
           T ++  +H   HL  +  +WP   WMA
Sbjct: 10  TNIALRKHQCSHLFTIKRVWPVTRWMA 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,925,087
Number of Sequences: 59808
Number of extensions: 589896
Number of successful extensions: 1632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)