Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.50 
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   1.5  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   4.7  
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)             28   4.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +3

Query: 12  EDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVE 191
           E +H    S+F  +Y+LP     + V++ +T DG L + A  +E     + TE  +    
Sbjct: 73  EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQETEVSLVGAS 128

Query: 192 TGAPYKKDEPVEKTTVETLDV 254
           TG+     +  +K    TLDV
Sbjct: 129 TGSAGDIAKIDDKRFTVTLDV 149


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 54  YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 206
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 310 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 399
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 244 PWTFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPT 384
           PWTF  S A   SSS S  S+ ++ E+ T H+  +        R PT
Sbjct: 206 PWTFRMSPASSSSSSSSSSSSSSQ-EDTTSHSCHSPSQAPASPRPPT 251


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 57   SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 233
            ++PVN+ A          G  +VT  ++  V +   T  V P+V   A   K EP  +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307


>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 18  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 197
           D DV+A Q    YS PV    +  +   +  G L  T   +   +KT+N +    I+E  
Sbjct: 61  DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120

Query: 198 APY 206
            PY
Sbjct: 121 KPY 123


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 9   KEDDHDVFASQFFHTYSLPVNSSAA 83
           +E+D DV+A      Y +P N SAA
Sbjct: 250 EEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
          Length = 617

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 18  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 197
           D DV+A Q    YS PV       +   +  G L  T       +KT+N + +  I+E  
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196

Query: 198 APY 206
            PY
Sbjct: 197 KPY 199


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 280 SSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRK 390
           S+SGSD S   R E   D   R+    R+R+  P R+
Sbjct: 839 SASGSDSSPHRRSESPRDRRRRSPEHRRRREASPPRR 875


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,724
Number of Sequences: 59808
Number of extensions: 195512
Number of successful extensions: 760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)