Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10444X
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       96   1e-20
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                       71   4e-13
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    31   0.50 
SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)                30   0.88 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   3.6  
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_52265| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_4962| Best HMM Match : FAD_binding_4 (HMM E-Value=5.7e-31)          27   8.2  
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)                       27   8.2  
SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)                    27   8.2  
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   QHHIYYIAGSSRAEVEKSPFAERLVXRGYEVLYLTEAVDEXCISSXHEYEGHKFQNIAKE 182
           Q  IY++AG +R EVE SPF E+L+  GYEVLYL E VDE C+ S  E+EG KFQN+AKE
Sbjct: 519 QDVIYFMAGHNRKEVESSPFVEKLLKEGYEVLYLIEPVDEYCMQSLPEFEGKKFQNVAKE 578

Query: 183 IFDL-EEGDRAKEKLEAYKKQYEXL 254
              + E+ D+ K+K E  +K YE L
Sbjct: 579 GLKIGEDSDKKKKKFEELEKTYEPL 603



 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 230 LQEAVRXAARWLG-DKLGSWITRTTV*QRXXXXXXXXXXXXFGWTGNMERLALSNAHQKA 406
           L++      +WL  D L   I + T+ +R            +GW+GNMER+  S A+ K+
Sbjct: 596 LEKTYEPLLKWLKEDALKDQIEKATISERLHDSPCALVASSYGWSGNMERIMRSQAYAKS 655

Query: 407 DDP 415
            DP
Sbjct: 656 SDP 658


>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +3

Query: 3   QHHIYYIAGSSRAEVEKSPFAERLVXRGYEVLYLTEAVDEXCISSXHEYEGHKFQNIAKE 182
           Q  IY+I G S+ +V  S F ER+  RG+EVLY+ E +DE  I    EY+G K  ++ KE
Sbjct: 419 QKDIYFITGESKDQVSHSAFVERVKSRGFEVLYMVEPIDEYAIQQLKEYDGKKLVSVTKE 478

Query: 183 IFDLEEGDRAKEKLEAYKKQYEXL 254
             +L E +  K+  E    +YE L
Sbjct: 479 GLELPEDEDEKKAREEKVAKYEGL 502


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 150  EGHKFQNIAKEIFDLEE--GDRAKEKLEAYKKQYEXLRA 260
            E  K  N  K+  DL E  G+R KE+L A+ ++Y+ LRA
Sbjct: 2445 EKEKKLNDIKQASDLSENEGNRLKEELNAFTERYDELRA 2483


>SB_14911| Best HMM Match : Amelogenin (HMM E-Value=1.7)
          Length = 326

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 294 RVIQLPSLS-PSQRAAXRTASCRPPASPWR-GRLPP 193
           R   LP+ S P+ RA+ R  S RPPASP + GR  P
Sbjct: 158 RSSDLPASSRPTSRASERLISTRPPASPPKPGRASP 193


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 132  SSXHEYEGHKFQNIAKEIFDLEEGDRAKEKLEAYKKQYEXLRAGW 266
            S+ H+   ++ + + K   D E  +R K++L++YK +YE L + +
Sbjct: 1193 SATHDTRYYEIETLYKASQDKE--NRMKQELQSYKNRYEKLESDY 1235


>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 162 FQNIAKEIFDLEEGDRAKEKLEAYKKQYEXLRA 260
           + N  ++I D ++  +AKE+LE+ K+ YE L A
Sbjct: 118 WSNKMEKIKDKDKLKQAKEELESAKRNYEALNA 150


>SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 262 AGRQAGQLDHSHHRLAAXGPLARSAGRQRLRLDRQHGAPRP----LQRAPEGRRPQ 417
           A R  G+        ++ GP  R   R R R+ R+   PRP    L R P  RRP+
Sbjct: 40  ASRFQGESSLKRKENSSQGPRQRLRVRLRYRICRERQYPRPGSGILTRFPFDRRPK 95


>SB_52265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +1

Query: 271 QAGQLDHSHHRLAAXGPLARSAGRQRLRLDRQHGAPRP----LQRAPEGRRPQ 417
           Q G+        ++ GP  R   R R R+ R+   PRP    L R P  RRP+
Sbjct: 36  QEGESSLKRKENSSQGPRQRLRVRLRYRICRERQYPRPGSGILTRFPFDRRPK 88


>SB_4962| Best HMM Match : FAD_binding_4 (HMM E-Value=5.7e-31)
          Length = 916

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 279 PSLSPSQRAAXRTASCRPPASPWRGRL 199
           P+ SP+           PP SPW+ RL
Sbjct: 264 PNKSPNSTPPDSPVHTTPPGSPWKSRL 290


>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
          Length = 474

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 42  EVEKSPFAERLVXRGYEVLYLTEAVDEXCISSXHEYEGHKFQNIAKEI-FDLEEGDRAKE 218
           EV+K   +E +  R   + +L + + E  + +    EG   +  A+ + F ++E +R   
Sbjct: 232 EVKKEKESE-IQQRNEMIAHLKDQLQE--MKAKTSMEGKYIKKDAERLKFKIDEEERVNN 288

Query: 219 KLEAYKKQYEXL 254
           ++EAY KQ+  +
Sbjct: 289 EIEAYLKQHHQI 300


>SB_40303| Best HMM Match : CH (HMM E-Value=5.1e-10)
          Length = 82

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 122 LVHGLGEVQHLVAAXHQALGERRLLHLSAAGARDVVD 12
           L H L + + L+       GE+ L+HL   GA D+VD
Sbjct: 29  LYHDLQDGRKLILLLEVLSGEK-LVHLENVGAHDIVD 64


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 122 LVHGLGEVQHLVAAXHQALGERRLLHLSAAGARDVVD 12
           L H L + + L+       GE+ L+HL   GA D+VD
Sbjct: 65  LYHDLQDGRKLILLLEVLSGEK-LVHLENVGAHDIVD 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,989,427
Number of Sequences: 59808
Number of extensions: 143888
Number of successful extensions: 483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)