Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10443
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 41 0.001
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 40 0.002
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 39 0.005
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 37 0.020
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 36 0.036
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.082
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.082
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 33 0.33
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.8
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 30 1.8
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 30 2.3
SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16) 29 5.4
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 29 5.4
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.2
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18) 28 9.5
SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19) 28 9.5
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 28 9.5
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/83 (45%), Positives = 50/83 (60%)
Frame = +1
Query: 7 YFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDIL 186
YFG YDT + +L ++ +VIS+ + VT AG+ SYP DT+RRRMMM SG A +
Sbjct: 193 YFGLYDTLKPILLG-EDAGVVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA---VK 248
Query: 187 YKNTIHCWATIAKTEGTSAFFKG 255
YK +I C I K EG + KG
Sbjct: 249 YKGSIDCTIQILKKEGAMSLMKG 271
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/71 (35%), Positives = 36/71 (50%)
Frame = +1
Query: 52 KNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 231
+ P+ V+ +YP D VRRRM M+ RA D YK+T+H +++I K E
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLE 214
Query: 232 GTSAFFKGPSP 264
G +KG P
Sbjct: 215 GFRGLYKGMWP 225
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 76 WAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 252
W++ T +T+ +++ YP + ++ R+ +Q KS+ YK H TI + EG A +K
Sbjct: 424 WSLVGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYK 482
Query: 253 GPSPT 267
G +P+
Sbjct: 483 GVTPS 487
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 40 LPDPKNTPIVISWA-IAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWA 213
L DP N + S + +A T +T+ +++ YP + ++ R+ +Q KS+ YK H
Sbjct: 142 LEDPHNGELSDSGSMLAGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALK 200
Query: 214 TIAKTEGTSAFFKGPSPT 267
TI + EG A +KG +P+
Sbjct: 201 TILREEGILALYKGVTPS 218
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 121 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGPSP 264
YP D V+ RM Q +++ +YKN+I C+ + + EG ++G P
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/73 (32%), Positives = 32/73 (43%)
Frame = +1
Query: 61 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTS 240
P+V VA +YP D VRRRM M+ G Y +T + I ++EG
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737
Query: 241 AFFKGPSPTSSEV 279
FKG P +V
Sbjct: 738 GLFKGMWPNLLKV 750
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 76 WAIAQTVTTVAGIISYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSAF 246
+ + T + A + P + V+ RM +Q R + Y+N H TIAK EG A
Sbjct: 8 FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67
Query: 247 FKGPSP 264
KG P
Sbjct: 68 QKGLFP 73
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 35.9 bits (79), Expect = 0.036
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 VAGIISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSAFFKGPSPT 267
V I P D + +M +Q RA+S I Y+N H TIA+T G ++G S T
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSAT 270
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 34.7 bits (76), Expect = 0.082
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 13 GFYDTARGMLPDPKNTPIVISWAIAQTVTT--VAGIISYPFDTVRRRMMMQSGRAKSDIL 186
G Y+ + +L +T + I V++ + I+ P D V+ R Q+ + I
Sbjct: 95 GAYEPIKNLLGATDSTSAALWKKIVAGVSSGVIGSAIATPTDLVKIRF--QAVKIGETIP 152
Query: 187 YKNTIHCWATIAKTEGTSAFFKGPSPT 267
YKN H + IAK EG + G PT
Sbjct: 153 YKNMFHAFYKIAKKEGFLGLWTGMKPT 179
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 34.7 bits (76), Expect = 0.082
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 AGIISYPFDTVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 255
A ++ +P DT++ R+ M + +YKN+ C+ I + EG F+G
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRG 102
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 106 AGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGPSP 264
A + P D ++ R+ + + R + + Y I C I EG +AF+KG P
Sbjct: 219 ASVAVNPLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVP 270
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +1
Query: 19 YDTARGMLPDPKNTPIVISWAIAQTVTTVAGI----ISYPFDTVRRRMMMQSGRAKSDIL 186
YDT + L K+T + +W + + +G+ IS P D ++ R+M
Sbjct: 283 YDTVKHNLL--KHTRLEDNWIVHSMSSVCSGLVAATISTPADVIKTRIMNNPSG------ 334
Query: 187 YKNTIHCWATIAKTEGTSAFFKGPSPTSSEVL 282
Y+ + C+ EG + +KG PT + +L
Sbjct: 335 YQGAVECFMLAVHREGLLSLYKGWLPTWTRML 366
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = +1
Query: 103 VAGIISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSAF 246
V +I YPF+TV R+ +Q R D L Y + + C+ TI + EG F
Sbjct: 287 VPDLILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGF 346
Query: 247 FKG 255
++G
Sbjct: 347 YRG 349
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 118 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGPSPT 267
+YP D VR R+ Q + + TI C + K G A +KG PT
Sbjct: 82 TYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGFVPT 129
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 103 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG 234
V+ I+YP D VRRRM + +G Y I+ + K +G
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDG 227
>SB_27075| Best HMM Match : rve (HMM E-Value=1.5e-16)
Length = 656
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 174
SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 58 SYVGHRLTSQGLQPDPEKIKAVIDMPPPTDKEGVQRLIGTVNYLDKFIKNKAEIQG--PI 115
Query: 175 SDILYKNTIHCWAT 216
S +L K+ I W T
Sbjct: 116 SQLLQKDAIFVWDT 129
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 533 RGNISLQLDKQLCNT**NNKLWNHCITL--YLTKNKLLKSFSCLIIHDLRGVAAT 375
R NI DK + +T N +W C ++ L + LLK++S L+IH L + T
Sbjct: 1489 RDNIQFLHDKHIFDTTYFNFMWFLCSSIPPTLEEKLLLKNWSDLLIHHLEQTSDT 1543
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Frame = +1
Query: 64 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG-----------RAKSDILYKNTIHCW 210
I++ + A ++A + P DT + R+ +Q R D Y+ +
Sbjct: 14 ILVKFCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTM 73
Query: 211 ATIAKTEGTSAFFKGPSP 264
T+ KTEG +KG P
Sbjct: 74 VTLFKTEGMKTMYKGLIP 91
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 124 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 252
P + +++R+ M Y+ IHC ++ K EG AF++
Sbjct: 17 PIEVIKQRLQMYGSP------YRGVIHCATSVFKEEGIRAFYR 53
>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
Length = 1052
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 174
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 175 SDILYKNTIHCWAT 216
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
>SB_17208| Best HMM Match : RVT_1 (HMM E-Value=6.4e-19)
Length = 1053
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 174
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 849 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 906
Query: 175 SDILYKNTIHCWAT 216
S +L K+ I W T
Sbjct: 907 SQLLQKDAIFVWDT 920
>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 174
SY G T++G+ PDP+ +I + V + G ++Y ++ + +Q
Sbjct: 363 SYVGHRLTSQGLQPDPEKIKAIIDMPPPTDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 420
Query: 175 SDILYKNTIHCWAT 216
S +L K+ I W T
Sbjct: 421 SQLLQKDAIFVWDT 434
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISY-PFDTVRRRMMMQSGRAKSD 180
S++ R L DP P ++ + A V Y P + V+ + +Q + +
Sbjct: 139 SFYSLSIGKRLQLSDPNKEPTMVQYYNAGVFCGVCVSFIYAPTERVKCLLQVQK-ESGTK 197
Query: 181 ILYKNTIHCWATIAKTEGTSAFFKGPSPTSSEVLV 285
Y+ C + +T G FKG PT ++
Sbjct: 198 ARYQGLGDCLLQVYRTGGLRGVFKGLGPTMGREVI 232
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 SYFGFYDTARGMLPDPKNTPIVISW---AIAQTVTTVAGIISYPFDTVRRRMMMQSGRAK 174
SY G T++G+ PDP+ VI + V + G ++Y ++ + +Q
Sbjct: 518 SYVGHRLTSQGLQPDPEKIKAVIDMPPPRDKEGVQRLIGTVNYLDKFIQNKAEIQG--PI 575
Query: 175 SDILYKNTIHCWAT 216
S +L K+ I W T
Sbjct: 576 SQLLQKDAIFVWDT 589
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,782,824
Number of Sequences: 59808
Number of extensions: 429712
Number of successful extensions: 1034
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -