Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10441
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                125   5e-29
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   7e-22
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              77   1e-14
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.4  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.8  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 28   7.4  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)                  28   9.8  
SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)                 28   9.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  125 bits (301), Expect = 5e-29
 Identities = 57/92 (61%), Positives = 68/92 (73%)
 Frame = +2

Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
           LKPGT+V F+P+NITTEVKSVEMHHE+L EA+PGD            +++RG VAGD KN
Sbjct: 131 LKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKN 190

Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
           NPPK    FTAQVIV+NHPG+    Y+PVLDC
Sbjct: 191 NPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDC 222



 Score =  107 bits (256), Expect = 1e-23
 Identities = 51/78 (65%), Positives = 59/78 (75%), Gaps = 6/78 (7%)
 Frame = +3

Query: 294 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 455
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 456 YKIGGIGTVPVGRVETGV 509
           YKIGGIGTVPVGRVETGV
Sbjct: 113 YKIGGIGTVPVGRVETGV 130


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (242), Expect = 7e-22
 Identities = 44/84 (52%), Positives = 63/84 (75%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           MI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     
Sbjct: 239 MISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVK 298

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNP 252
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 165
           MITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 30  MITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/100 (22%), Positives = 43/100 (43%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           M+ G +  D A+L++A              QT EH      + +K +++  NK+D  +  
Sbjct: 81  MLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKES 134

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTC 300
            ++ ++++I K V   I +    P + +S       E  C
Sbjct: 135 QAKDQYDQILKFVQGTIAEGA--PVIPISAQLKYNIEVIC 172


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -3

Query: 230  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 78
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 77   IPASNSPVPAAT 42
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
 Frame = -3

Query: 353 FTLHLPSLEPRHFG*RLQHVVSVPSRNGHESDSAGL*PIFLMYEDTSFLISSNLGSLYGG 174
           + +H+    P   G R+ H V+  S  G  + +  + P  +M +     ++    + +GG
Sbjct: 418 YPIHIGPYGPPPSGIRVSHAVTTASAQGAAATATVMNPAIIMDQTRYIALTQQAAAGFGG 477

Query: 173 SVESILF--TPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTAQSA 21
              + +    P  S +      S     + P L +P ++S +P +  ++  +A
Sbjct: 478 LATNCMAGDVPGSSSMMDVTTPSSGIYSM-PVLGVPPASSGIPVSISTSNPNA 529


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 SPDLRKSRRKYPHTSRRLATTQRCRFRAH 274
           SP +RKS RK+  + R+  +  R R R+H
Sbjct: 275 SPSMRKSDRKFKKSQRKSRSRSRNRSRSH 303


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 282 WHGDNMLEPSTKMPWFKGWQVERKE 356
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +1

Query: 286 TETTCWSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKS 465
           T +T  SL+ + +     R  + K  L ++ S+    P    P    S   +PC + T +
Sbjct: 7   THSTFASLKLRRIVKLSLRVCIHKCGLQKHTSIHTLAPVG--PRRDASTVYYPCSSATMT 64

Query: 466 VVLVPCPSAEL-KLVFETRYHCCLCPRQHHY 555
            V  PC SA +    + +R+      RQ +Y
Sbjct: 65  TVYYPCSSATMDSSAWNSRFASVKLHRQKNY 95


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 37  LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 213
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 214 EVSS 225
              S
Sbjct: 425 RTVS 428


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 772 WCVTFEILTRMVKHNDLSCKICSTLRWVVFGVTSNI 665
           W +  EI++R   H+DLSC I   L W  FG   N+
Sbjct: 184 WFI-IEIMSRS-DHHDLSCGIQCRLLWDGFGTWHNV 217


>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
          Length = 1552

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 145  VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCP 273
            + V+ +DS  PP   P  ++I +E+   +++   +PA +L  P
Sbjct: 1231 IEVDGIDSPSPPPPPPEEDDISEELVDEVQEFPVSPAETLPSP 1273


>SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 346 SVKKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVP-CPSAELKLVFETRY 522
           SV KA L + A   L    CH    +  P +F C   ++ V+L P  P   L  ++   +
Sbjct: 27  SVSKATLRQRAK-NLLWHWCHKTLSVLYPVMFSCGPLSRYVLLRPFIPLCSLAALYPVMF 85

Query: 523 HC 528
            C
Sbjct: 86  SC 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,081,789
Number of Sequences: 59808
Number of extensions: 638455
Number of successful extensions: 1764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)