Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10434X
(308 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 32 0.083
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.14
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 31 0.19
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 30 0.33
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 0.44
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 1.3
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 27 3.1
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 26 7.2
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 26 7.2
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32) 26 7.2
SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 26 7.2
SB_37296| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 25 9.5
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 25 9.5
SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_7751| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 32.3 bits (70), Expect = 0.083
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +1
Query: 97 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAE 201
+P+V D +S++ F+TS L+ V+T EK+V+P+ +
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKD 554
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 97 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 207
+PK D +S++ F+ + L+ V T EK ++PS ED+
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDI 632
Score = 29.1 bits (62), Expect = 0.77
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 260 SQLKHTETQXKNPVPD 307
S+LKH +T+ KNP+PD
Sbjct: 725 SKLKHVQTEEKNPLPD 740
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 248 EVYS-SQLKHTETQXKNPVPD 307
EV+ ++LKH ET KNP+PD
Sbjct: 492 EVFQKNKLKHVETLEKNPLPD 512
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 257 SSQLKHTETQXKNPVP 304
+S+LKH E Q KNP+P
Sbjct: 688 ASKLKHVEVQEKNPLP 703
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 260 SQLKHTETQXKNPVP 304
S+LKH TQ KNP+P
Sbjct: 573 SKLKHVVTQEKNPLP 587
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 260 SQLKHTETQXKNPVP 304
S+LKH ET KNP+P
Sbjct: 649 SKLKHVETVEKNPLP 663
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 15 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 149
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 85 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATGRTKS 228
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T + ++
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEA 381
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 30.3 bits (65), Expect = 0.33
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 176 KRLCFRLLKTSQLGGPRVLNRRYREVYSSQLK 271
K + LLKT +GGP ++ RY E S+++
Sbjct: 919 KNKAYELLKTGMVGGPSIVFTRYAEKVKSKIR 950
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 0.44
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 67 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 213
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 32 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 172
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 88 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 207
L DL +V +LKS+ EG CL D++ + DV
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADV 1163
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -1
Query: 176 SLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAILNQYIFDEEGDRRFVH 9
SLV TS KP L+ VA +GR F V+ T+ + + EEG + H
Sbjct: 12 SLVGTSCSNSQEKPIQRLYNVVAVVGRHFTYRVTPTDGS--KNFKITEEGKKTLPH 65
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 157 GDSWC*SLRADSSGLWRPW 101
G WC + D SG ++PW
Sbjct: 1191 GRDWCYGIMCDRSGQYKPW 1209
>SB_32755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 701
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 106 VATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATGRTKSP*STVSRSLFEPA*AHRDS 285
V D ++ E ++ D+D + I D+A GR+ ST S +P DS
Sbjct: 257 VGADSSNEDEPSLSASTLDLDFDTSIKFDDIADLAKGRSGRKESTSSWDDIQPTVVIIDS 316
Query: 286 XEEPG 300
EPG
Sbjct: 317 EFEPG 321
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 235 IKDSWSSQLRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 101
I DS QLR+ ++ W R+GD W LR+ + + PW
Sbjct: 413 IADSKQKQLRQHHDMQSDLKKWRTRYGD-WDPQLRSAETSFF-PW 455
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 127 QLEGFNTSCLRDVDTNEKIVLPSAEDVATGRTKSP*STVSRSLFEPA*AHRDS 285
+ E L D+ N K+ P ED+A +T P T R++ + + A RDS
Sbjct: 361 EAESMTIKELYDLIDNYKVPTPP-EDLAVYQTLRPTVTAVRNVIDKSLAERDS 412
>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
Length = 640
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 38 QKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVT 163
QK +D + A + LPP + + +P+T +S S P +S T
Sbjct: 363 QKELDDDLTAA-IYLPPKQEATPTPETTFISKVTSAPEISYT 403
>SB_21255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 107 TLGRSFREGVSLTEQAILNQYIF 39
T G+ F E +SLT Q N +IF
Sbjct: 12 TAGKKFLENISLTPQVQFNVHIF 34
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 292 LXLSLGVLKLARINFSIPSIKDSWSSQLRRLQ 197
+ LS G+L L +I F+ P K+ W R+Q
Sbjct: 189 IELSEGLLGLRKIAFTEPLSKERWKDLSERIQ 220
>SB_37296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 174 IGVDVTETAGVEAFELTLQVCGDLGEVFQ 88
IG+ +T+ + + GD GE+FQ
Sbjct: 44 IGISITDLPASSPITVRATITGDTGEIFQ 72
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 39 KNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQLSP 158
+ + ++ L RE P R P HR E R H+ SP
Sbjct: 780 RKVEVEKRLSREERD-PSRSPWASHREERKRRHTPHEDSP 818
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 125 VSSKASTPAVSVTSTPMKRLCFRLLKTSQLGGPRVLNRRYREVYSSQLKHTE 280
V S P +S + P+ L R L S+ G P + R YRE Y + E
Sbjct: 395 VMEMGSVPLLS-GNQPLSDL--RYLSLSRPGNPATIARYYREKYGDHFDYEE 443
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 68 P*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 172
P T PP T+P +P T +TP T+TP
Sbjct: 78 PTTTTPPATTTPTTPTT-TTPPATTTPTKPTTTTP 111
>SB_59385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 212 VATSSADGSTIFSLVSTSRRQLVL 141
+A S +DG +F + +TS QLVL
Sbjct: 991 LAFSRSDGDAVFLMKNTSNHQLVL 1014
>SB_7751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 214 QLRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 101
QLR L T + W DS+C + LWRPW
Sbjct: 68 QLRALVSTICRGAVW-----DSFCELITRTGPTLWRPW 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,895
Number of Sequences: 59808
Number of extensions: 196661
Number of successful extensions: 573
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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