Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10433X
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 148 3e-36
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 142 2e-34
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 130 5e-31
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 7e-27
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 90 9e-19
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 3e-15
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 6e-15
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 75 3e-14
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 6e-11
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 48 3e-06
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 29 1.7
SB_7986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 29 2.2
SB_24060| Best HMM Match : GED (HMM E-Value=0.52) 29 2.2
SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_43194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 3.9
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 3.9
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6) 28 5.2
SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3) 28 5.2
SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003) 27 6.9
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66) 27 9.1
SB_57752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 27 9.1
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 148 bits (358), Expect = 3e-36
Identities = 72/90 (80%), Positives = 82/90 (91%)
Frame = +1
Query: 4 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 183
+PKI+V +KGE K+FFPEE+SSMVLTKMKETAEAYLG V +AV+TVPAYF+DSQRQATK
Sbjct: 100 RPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATK 159
Query: 184 DAGTISGLNVLRIINEPTAAAIA*VLTKRV 273
DAGTI+GLNVLRIINEPTAAAIA L K+V
Sbjct: 160 DAGTIAGLNVLRIINEPTAAAIAYGLDKKV 189
Score = 124 bits (298), Expect = 6e-29
Identities = 54/64 (84%), Positives = 62/64 (96%)
Frame = +2
Query: 317 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLR 496
FDVS+LTIEDGIFEVKSTAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RRLR
Sbjct: 205 FDVSVLTIEDGIFEVKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRRLR 264
Query: 497 TACE 508
TACE
Sbjct: 265 TACE 268
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ERNVLIFDLGGGT 317
ERNVLI+DLGGGT
Sbjct: 192 ERNVLIYDLGGGT 204
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 142 bits (344), Expect = 2e-34
Identities = 71/88 (80%), Positives = 78/88 (88%)
Frame = +1
Query: 4 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 183
KPKI+V YKGE KTF EE+SSMVL KMKETAEAYLG+ V +AVITVPAYFNDSQRQATK
Sbjct: 100 KPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATK 159
Query: 184 DAGTISGLNVLRIINEPTAAAIA*VLTK 267
DAGTI+GLNVLR+INEPTAAA+A L K
Sbjct: 160 DAGTIAGLNVLRVINEPTAAALAYGLDK 187
Score = 120 bits (289), Expect = 7e-28
Identities = 55/65 (84%), Positives = 61/65 (93%), Gaps = 1/65 (1%)
Frame = +2
Query: 317 FDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRL 493
FDVSILTI+DG +FEVKSTAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+RRL
Sbjct: 205 FDVSILTIDDGSLFEVKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMRRL 264
Query: 494 RTACE 508
RTACE
Sbjct: 265 RTACE 269
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 273 TGERNVLIFDLGGGT 317
+GE+NVLIFDLGGGT
Sbjct: 190 SGEKNVLIFDLGGGT 204
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 130 bits (315), Expect = 5e-31
Identities = 64/89 (71%), Positives = 75/89 (84%)
Frame = +1
Query: 4 KPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 183
KP ++V K E KTF EE+S+MVLTKMKETAEAYLGK V +AV+TVPAYFND+QRQATK
Sbjct: 798 KPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 857
Query: 184 DAGTISGLNVLRIINEPTAAAIA*VLTKR 270
DAG I+GL V+RIINEPTAAAIA + K+
Sbjct: 858 DAGAIAGLTVMRIINEPTAAAIAYGMDKK 886
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/64 (51%), Positives = 50/64 (78%)
Frame = +2
Query: 317 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLR 496
FDVS+LTI++G+FEV +T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+++LR
Sbjct: 902 FDVSLLTIDNGVFEVVATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLR 961
Query: 497 TACE 508
E
Sbjct: 962 REVE 965
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +3
Query: 276 GERNVLIFDLGGGT 317
GE+N+L+FDLGGGT
Sbjct: 888 GEKNILVFDLGGGT 901
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 117 bits (281), Expect = 7e-27
Identities = 59/72 (81%), Positives = 64/72 (88%)
Frame = +1
Query: 58 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 237
++SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQATKDAG ISGLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 238 AAAIA*VLTKRV 273
AAAIA L K+V
Sbjct: 271 AAAIAYGLDKKV 282
Score = 116 bits (279), Expect = 1e-26
Identities = 52/64 (81%), Positives = 59/64 (92%)
Frame = +2
Query: 317 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLR 496
FDVS+L+IEDGIFEVKST GDTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRRLR
Sbjct: 298 FDVSVLSIEDGIFEVKSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRRLR 357
Query: 497 TACE 508
TACE
Sbjct: 358 TACE 361
Score = 111 bits (268), Expect = 2e-25
Identities = 52/64 (81%), Positives = 57/64 (89%)
Frame = +1
Query: 1 GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQAT 180
G+PK+KV YKGE KTFF EE+SSMVL KMKETAEAYLG V +AV+TVPAYFNDSQRQAT
Sbjct: 124 GRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQAT 183
Query: 181 KDAG 192
KDAG
Sbjct: 184 KDAG 187
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 279 ERNVLIFDLGGGT 317
ERNVLIFDLGGGT
Sbjct: 285 ERNVLIFDLGGGT 297
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 90.2 bits (214), Expect = 9e-19
Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 24/109 (22%)
Frame = +1
Query: 13 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 192
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AVITVPA+FND+QRQATKDAG
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 193 TISGLNVL------------------------RIINEPTAAAIA*VLTK 267
TI+GL+VL RIINEPTAAAIA L K
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDK 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/64 (54%), Positives = 48/64 (75%)
Frame = +2
Query: 317 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLR 496
FD+SIL I+ G+FEVK+T GDT+LGGEDFDN ++ + EFK++ DL+ + AL+RLR
Sbjct: 12 FDISILEIQKGVFEVKATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQRLR 71
Query: 497 TACE 508
A E
Sbjct: 72 EAAE 75
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 77.4 bits (182), Expect = 6e-15
Identities = 37/91 (40%), Positives = 59/91 (64%)
Frame = +1
Query: 13 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAG 192
I+V Y G+ + F PE+V +M+ T++K TAE L V + VI+VP+Y+ D QR+ DA
Sbjct: 160 IQVQYLGKQEVFSPEQVMAMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDAS 219
Query: 193 TISGLNVLRIINEPTAAAIA*VLTKRVLENE 285
+GLN LR++N+ TA ++A + K+ L +
Sbjct: 220 ATAGLNCLRLMNDTTAVSLAYGIYKQDLPTD 250
Score = 54.4 bits (125), Expect = 5e-08
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +2
Query: 323 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTA 502
V I G +V STA + +LGG DFD +V HF QEFK KYK D+ ++ +A +L
Sbjct: 267 VCITAFLKGQLKVLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKLGAE 326
Query: 503 CE 508
CE
Sbjct: 327 CE 328
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 74.9 bits (176), Expect = 3e-14
Identities = 40/90 (44%), Positives = 54/90 (60%)
Frame = +1
Query: 1 GKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQAT 180
G V KG PEE+ V+ K++ AE L TV AV++VPA F+ QR AT
Sbjct: 129 GNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSVPAEFDIKQRNAT 188
Query: 181 KDAGTISGLNVLRIINEPTAAAIA*VLTKR 270
A +++G+ VLR+INEPTAAA+A L K+
Sbjct: 189 VKAASLAGITVLRVINEPTAAALAYGLHKK 218
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 320 DVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRT 499
DVS+L I+ G+F + AG+ LGG+DF+ R + + +Q +++ + L T ++RLR
Sbjct: 235 DVSLLNIQGGMFVTMAMAGNNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQRLRQ 293
Query: 500 ACE 508
E
Sbjct: 294 EVE 296
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +1
Query: 7 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKD 186
P +K Y+ D TF PEE+ M+L + E + +++ V+TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 187 AGTISGLNVLRIINEPTAAAI 249
A + GLNVL+I+N TA A+
Sbjct: 127 AAELVGLNVLQIMNSNTAVAL 147
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 359 VKSTAGDTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRR 490
+K D LGG D R+ +H VQ FK+ K+K ++ + RA+ +
Sbjct: 201 IKGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAK 246
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Frame = +2
Query: 320 DVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRAL 484
DV++L++ +G+++V +T D LGG +FD +++ +FKR K+K D TNKR+
Sbjct: 167 DVTLLSVINGMYKVLATEYDGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSK 226
Query: 485 RRLRTACE 508
+L+T+ E
Sbjct: 227 TKLQTSAE 234
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 415 GQPLCPGVQEEIQKGPRYQQESS*AFAYCM 504
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 366 PPPATPTWEVRTL-TIAWSTTLSRSSRGNTKRTSLPTREL 482
PPPA T E L T +W+ T S + R KRT LPT L
Sbjct: 436 PPPAFQTDEPERLQTSSWTETASGTGREEFKRT-LPTAAL 474
>SB_7986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -1
Query: 442 LELLDKVVDHAIV-KVLTSQVGVAGGGFHLEDTILDGKDGHVEVPPPRSKIS 290
L + DK +D+ I KVL+ +VG+ G +H++ LDG V+ P R ++
Sbjct: 36 LTIDDKTLDYLIFPKVLSDEVGLLDGKYHIK---LDGTVSPVQHAPRRVPVA 84
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 287 CTYL*PRRRYFDVSILTIEDGIFE-VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 463
C Y +R + ++ IED V+S+ G L + MVN+FV K YKK L
Sbjct: 483 CLYNPAEKRRVNFNLNLIEDADLSIVESSQGLDELSQQLPITSMVNNFVNWAKESYKK-L 541
Query: 464 ATNKRALR 487
A++K + R
Sbjct: 542 ASSKGSQR 549
>SB_24060| Best HMM Match : GED (HMM E-Value=0.52)
Length = 297
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -2
Query: 270 PFCQDLSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEVRGNRDNCILHSFAKISFGSF 91
P L+N + + EN+++ T IFCG + I +RG RD+ ++ +F +
Sbjct: 55 PINLQLNNIVQQQIARNRENLRSLFKTIIFCGKN--NIPLRGLRDSDPTNAALAGNFQAL 112
Query: 90 LHFRKHHGTDFL 55
L FR G L
Sbjct: 113 LEFRVDSGDQIL 124
>SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 292 LSLTSAAVLRRVHPYHRGWYLRGE 363
LS+T A+L + PYHRG+Y E
Sbjct: 285 LSITILALLFKGQPYHRGFYCNDE 308
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 424 LCPGVQEEIQKGPRYQQESS*AFAYCM*R 510
LCP ++ + GP +++E AFA C+ R
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVAR 197
>SB_43194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 311 RYFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 472
R+ +IL+ D VK D+H FD+ +VN FV KK L+ N
Sbjct: 33 RHTKYTILSESDDTI-VKPKPADSHRNQSAFDDELVNKFVNCMMWDGKKSLSQN 85
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 424 LCPGVQEEIQKGPRYQQESS*AFAYCM 504
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 424 LCPGVQEEIQKGPRYQQESS*AFAYCM 504
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
Length = 774
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 300 DLGGGTSTCPSLPSRMVSSR*NPPPATPTWEVRTL-TIAWSTTLSRSS 440
D T+T P+LP +V+ R PPP+T ++ T+ T+ STT + S+
Sbjct: 98 DSSATTTTTPTLP--IVTLR--PPPSTSVTQIVTMTTVTISTTTAMST 141
>SB_46921| Best HMM Match : Endomucin (HMM E-Value=6.3)
Length = 312
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +3
Query: 318 STCPSLPSRMVSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPTREL 482
S CPSLP+ S TP + TI T + SS T TS PT ++
Sbjct: 46 SLCPSLPTSSTHSTSPTVQTTPAFTTSPATILPPTAKTTSS---TSSTSKPTEDV 97
>SB_30476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +2
Query: 371 AGDTHLGGEDFD---NRMVNHFVQEF 439
AGD +GGEDFD +V+ F++ F
Sbjct: 19 AGDNDIGGEDFDVMSKSVVSRFIRHF 44
>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
Length = 700
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 356 EVKSTAGDTHLGGEDFDNRMVNHFVQEFK 442
EVK T+GD + E DN + H ++ FK
Sbjct: 21 EVKITSGDKGMTKEMIDNHIKGHILEYFK 49
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 365 STAGDTHLGGEDFDNRMVNHF---VQEFKRKYKKDLATNKRAL-RRLRTACEG 511
S A T + G++ N V F + ++KR+Y+K++ KR+L RR++ G
Sbjct: 664 SYASITFINGDEAGNMYVALFGAMLFQYKREYRKEIKQEKRSLCRRVQVLALG 716
>SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)
Length = 424
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +3
Query: 291 LIFDLGGGTSTCPSLPSRMVSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLP 470
LI LG TST + PS S+ PPAT T L A ST S +S S+
Sbjct: 327 LICPLGPPTSTSQTQPSTSNSTATTWPPATST----LLQSASSTATSSNSTSTATSMSVK 382
Query: 471 TR 476
+R
Sbjct: 383 SR 384
>SB_57752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/48 (25%), Positives = 18/48 (37%)
Frame = +3
Query: 66 FHGAYENEGNCRSLSWQNCAECSYHGSRVLQ*LSKTSHKRCRYHLWLE 209
+HG CR + WQ V++ + K S C +LE
Sbjct: 30 YHGIKRKADECRQVEWQFSKHQKALTGHVIKTIDKPSESACETECYLE 77
>SB_33718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 72 GAYENEGNC-RSLSWQNCAECSYHGSRVLQ*LSKTSHKRCRYH 197
G +N C SL W C + +HG +V++ S ++ C +H
Sbjct: 537 GKTQNPNECINSLVWARCPKHKHHGPKVVRFASASA--VCHFH 577
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 424 LCPGVQEEIQKGPRYQQESS*AFAYCM*R 510
LCP ++ GP +++E S AFA C+ R
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTR 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,911
Number of Sequences: 59808
Number of extensions: 365281
Number of successful extensions: 1168
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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