Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10430
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35681| Best HMM Match : NIC (HMM E-Value=1e-08) 65 6e-11
SB_18213| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.69
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14) 31 1.2
SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2) 30 1.6
SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31) 29 2.8
SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5) 29 3.7
SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 28 6.5
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 28 8.5
SB_14088| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 28 8.5
>SB_35681| Best HMM Match : NIC (HMM E-Value=1e-08)
Length = 333
Score = 64.9 bits (151), Expect = 6e-11
Identities = 34/87 (39%), Positives = 50/87 (57%)
Frame = +3
Query: 246 VAAYVRKFELTDPSDALHYYYFLRNLKDPSGKNLFMCCCTDLALESRDYELLFGRIDANS 425
+ +Y RKFE+TDP +AL Y+Y LRN+K P G +LFM C ++L LE+R+
Sbjct: 190 IMSYTRKFEMTDPREALQYFYLLRNIKRPHGGDLFMECVSELVLETRE------------ 237
Query: 426 SLRSPGLVDQFNNPHIDSKVIALNVAE 506
PG +D+F D++ I VA+
Sbjct: 238 ----PGCIDKFQRDRQDTQAIIERVAK 260
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +2
Query: 518 KGLFEDAITMYDIADNLEKVVELSCILLAQV 610
KGLFE+AI +YD+A N +K +EL L++Q+
Sbjct: 265 KGLFEEAIRLYDLAKNHDKTIELMNKLISQL 295
>SB_18213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 76 AIEFLSRIPRYQVHGVHMALALHDVYMLGTPRNVQAPL 189
A+EFLSR+ ++ H VH+A++L+++ +L ++Q L
Sbjct: 1 AVEFLSRVEFFRSHAVHIAISLYEMGLLAVSESLQTQL 38
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 295 KASEGSVSSNFLT*AATVSLSSNDATVVDLLCPQTGVELEHSSVCPACKRHVTQE 131
+ SE V+S+F+ + + ++ VD Q + ++H C AC HV +E
Sbjct: 957 QTSECPVASSFVCGSNGKTYTNECLLKVDSCAEQKEISVKHKGACDACSNHVCEE 1011
>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
Length = 1931
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -3
Query: 630 SPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSNKPLFTSAQQHSTQSPCCQYEGY*ID 451
+P F +C+ + D+ +FS Y ++ S + ++ Q + C Q E +
Sbjct: 51 APSHGFMSCSGHSTDDICSFS--CETGYELLGSRTRVCLSNGQWSGSAVECAQKECADLQ 108
Query: 450 PPIQGFLNL 424
PP+ GF+ L
Sbjct: 109 PPLYGFVAL 117
>SB_14511| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
Length = 276
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -3
Query: 657 LASRPRTPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSNKPLFTSAQQHSTQSPC 478
L++RP +S PLF +S N+++ ++A S + SS +PL ++ S
Sbjct: 25 LSTRPLVNLSTRPLFNA-SSRQHVNASSRELVNASSCQRVLSSTRPLVNASSCQRVLSST 83
Query: 477 CQ 472
CQ
Sbjct: 84 CQ 85
>SB_41470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 201 VHRQEWSLNIPRCAQHVNVM*RKSHMNTVYLISWYSREEFDSWLKLSSQSQHLKVHDWLF 22
V+++ L + + H+ V R SH+ S + S LK++ +S HLKV+ LF
Sbjct: 109 VNKRSSHLKVDKRLFHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRSSHLKVNKRLF 168
>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
Length = 506
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 651 SRPRTPVSPPPLFTTCASNMQDNSTTFSK 565
SRPR+ +P P F +NM+ N +T S+
Sbjct: 106 SRPRSSSTPSPHFPVSVTNMEVNGSTLSR 134
>SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)
Length = 359
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 VFIWLLRYMTFTCWAHRGMFKLHSCLWTQKIHH 217
VF+WL + + W R F+L++ L KI H
Sbjct: 323 VFLWLCEEVESSIWLLRQSFRLNAALICSKIRH 355
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 VFIWLLRYMTFTCWAHRGMFKLHSCLWTQKIHH 217
VF+WL + + W R F+L++ L KI H
Sbjct: 183 VFLWLCEEVKSSIWLLRQSFRLNAALICIKIRH 215
>SB_9440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 400 YLVELTLIQV*EALDWWINSITLILT 477
Y+VE IQ+ E L+WW N ++L+L+
Sbjct: 33 YVVEFDQIQIPEKLEWW-NFLSLLLS 57
>SB_28666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 100 PRYQVHGVHMALALHDVYMLGTPRNVQAPLLSVDTED 210
PRY+ HG H +++L Y L TP +A ++ V + D
Sbjct: 3 PRYKEHGTHFSISLLRHYRL-TPYKSRAKMVDVLSAD 38
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = -3
Query: 693 KPRSFASVSSHRLASRPRTPVSPPPLFTTCASNMQD--NSTTFSKLSAISYMVIASSNKP 520
KP+ + + R +S T + PPL TT +S +Q+ N+ S + + +K
Sbjct: 148 KPKRAGTFRTRRTSSSSLTDIPSPPLQTTISSPVQNVPNNLGTSNQGPLPSFASITVSKA 207
Query: 519 LFTSAQQHSTQ 487
L TS + ++
Sbjct: 208 LVTSTENSQSK 218
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 253 AATVSLSSNDATVVDLLCPQTGVELEHSSVCPACKRHVTQEPYEHRVL 110
AA+VSL N + +V++L T + ++ +RH EP EH L
Sbjct: 327 AASVSLFVNTSNLVEMLSIGTMLAYIAIAISVLLERHKPAEPREHEFL 374
>SB_14088| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 621
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 211 DLLCPQTGVELEHSSVCPACKRHVTQEPYEHRVLDILVFSRGIR*LAQIVQSE 53
DLL P E ++ +C K H +P + + + S+G R +V E
Sbjct: 77 DLLAPAKPGEKSYADLCTLVKSHFNPKPKDEDIYPLFAVSQGNRQNPYVVDVE 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,623,485
Number of Sequences: 59808
Number of extensions: 404820
Number of successful extensions: 1172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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