Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10423
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19680| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_49596| Best HMM Match : HTH_psq (HMM E-Value=7.8)                   29   3.5  
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)                    29   3.5  
SB_48076| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  

>SB_19680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 246 KRWRNACSACSLSVSPSKKFTFACSV 169
           KRW +AC   S ++S  KK+T+ CS+
Sbjct: 83  KRWIHACGRKSFTLSHIKKYTYICSL 108


>SB_49596| Best HMM Match : HTH_psq (HMM E-Value=7.8)
          Length = 147

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 LSRTLVTSQDPTEHANVNFFEGETEREQALHAFRHLFRTS*R-HK 268
           L R  +  Q     A  N F G T   Q +H FRH+FR   R HK
Sbjct: 14  LERITLKHQSSGGSALGNVFVGPTTYIQFMHCFRHIFRDKRREHK 58


>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
          Length = 1345

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137  LSRTLVTSQDPTEHANVNFFEGETEREQALHAFRHLFRTS*R-HK 268
            L R  +  Q     A  N F G T   Q +H FRH+FR   R HK
Sbjct: 1212 LERITLKHQSSGGSALGNVFVGPTTYIQFMHCFRHIFRDKRREHK 1256


>SB_48076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 246 KRWRNACSACSLSVSPSKKFTFACSV 169
           KRW +AC   S ++S  KK T+ CS+
Sbjct: 83  KRWIHACGRKSFTLSHIKKDTYICSL 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,465,521
Number of Sequences: 59808
Number of extensions: 579259
Number of successful extensions: 1602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)