Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30142
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 166 1e-41
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 104 5e-23
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 104 5e-23
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 79 3e-15
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.14
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09) 28 5.1
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 166 bits (403), Expect = 1e-41
Identities = 77/90 (85%), Positives = 78/90 (86%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVY EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLR
Sbjct: 717 EPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLR 776
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASP 271
S TGGQAFPQCVFDHWQVLPGD DL + P
Sbjct: 777 SKTGGQAFPQCVFDHWQVLPGDVHDLASMP 806
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1
Query: 262 SKPYNVVQETRKRKGLKEGLP 324
S P VV TRKRKGLKEG+P
Sbjct: 804 SMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 104 bits (250), Expect = 5e-23
Identities = 43/85 (50%), Positives = 60/85 (70%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR
Sbjct: 697 EPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLR 756
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCD 256
++T GQAF VF HWQ++PGDP D
Sbjct: 757 THTQGQAFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 104 bits (250), Expect = 5e-23
Identities = 43/85 (50%), Positives = 60/85 (70%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFGF DLR
Sbjct: 7 EPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLR 66
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCD 256
++T GQAF VF HWQ++PGDP D
Sbjct: 67 THTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 79.0 bits (186), Expect = 3e-15
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = +2
Query: 8 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 187
+Y C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFGF+ ++R
Sbjct: 415 MYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFGFSEEIRKR 474
Query: 188 TGGQAFPQCVFDHWQVLPGDP 250
T G A PQ +F HW+ + DP
Sbjct: 475 TSGLANPQLMFSHWEAIDLDP 495
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 47 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 199
G + +NRR G V G F + A +P+N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 183 PTPADRPSRSAYSTIGRSSLETRATSEQALQRCTGNEKEERIEGRSPRLN 332
P A+ P RS Y +S + +++ +GN K ++I R+P L+
Sbjct: 220 PDGAEEPDRSVYGDHRSTSSARSVSMPRSIDMFSGNAKLQQIPERAPLLH 269
>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
Length = 283
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 228 QWSNTHCGKACPPVLE--RKSAVKPNDSL 148
Q+ +CG ACPP E KS VK N L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 90 SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 242
+K P + L SL P + S S L P+P +PS S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124
>SB_15551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 183 PTPAD-RPSRSAYSTIGRSSLETRATSEQALQRCTGNEKEERIEGRSPRL 329
P P+D P S Y + S+LE T E Q CTG+++ R ++P +
Sbjct: 52 PIPSDYEPVPSDYEPVP-STLEPIQTPESPYQTCTGSQRPPRDLYQTPTI 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,575
Number of Sequences: 59808
Number of extensions: 380559
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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