Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30129
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5) 32 0.60
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 30 1.8
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 30 2.4
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 29 3.2
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 29 4.2
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 4.2
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 5.6
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 29 5.6
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 28 7.4
>SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)
Length = 246
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +2
Query: 191 QTKHRDRRSDHTPLIRRETLSLLSDDLYLKMKATSPNGQIPEEWGPKDLSWSKYLASVGK 370
Q + S H PL+ E + LK+K G PE+ K+ SW + K
Sbjct: 123 QNEQTTEVSLHIPLLSHEMEENETTHEKLKVKHRMSQGMEPEKVPTKNKSWRESPKYTDK 182
Query: 371 PVNNRDHVIIENFIKPSGK 427
+ + +I+E F K GK
Sbjct: 183 ILRDLLEIILEEFEKKKGK 201
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 126 NAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDEKH 248
N + G SG NCRLCK I + H+ KH
Sbjct: 575 NGENTQGCEFVKAVSGFNCRLCKTFIMNGADVMKHVKARKH 615
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 142 PVITSQPPHPDLTAGSANKT*RPPKRPYS 228
PV TS PPHP A NK PP P S
Sbjct: 578 PVATSPPPHPPPPAHHVNKPGVPPPPPPS 606
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -3
Query: 768 EFNSSPGKLFGRIPLFHGQDGEILGYRSPRCSLLSKMFDDV 646
E S G+ +G F+G+DG GY SPR S+ S++ DDV
Sbjct: 652 ESKRSDGRDYGSS--FNGRDGRD-GYSSPRTSMDSRVSDDV 689
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +2
Query: 188 LQTKHRDRRSDHTPLIRRETLSLLSDDLYLKMKATSPNGQIPEEWGPKDLSWSKYLASVG 367
+Q+ R R D TP R++ L LK K +P G D + L
Sbjct: 64 VQSLARLERQDQTPESRKKVAELQFRITELKNKLKELEMSLPSSAGITDSIFHGILVWYY 123
Query: 368 KPVNNRDHVIIENFIKPSGKV 430
+ ++H++I N +P G +
Sbjct: 124 STLTLQEHILIANGSRPEGTI 144
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 511 LRNAAPKK-LALLYKNYCRPSEYYASFGNFYICSICPE 621
L N+ P LAL YK C+ Y A G +++C+ CP+
Sbjct: 163 LENSKPYVYLALHYKAACKVGTYKAVHG-YFVCASCPD 199
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 221 HTPLIRRETLSLLSDDLYLKMKATSPNGQIPEEW 322
H L+ +ET S ++D + + +GQ+PE+W
Sbjct: 244 HLALLAKETASEIADVVTFLFNQSYSSGQLPEDW 277
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 365 GKPVNNRDHVIIENFIKPSGKVGNFCTCCDMTLKGPRQVLFN 490
G V +RD+V F +PS K G C G +LFN
Sbjct: 4697 GLDVGSRDNVYFLRFARPSVKDGGLYKCVATNEHGEASMLFN 4738
>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 2629
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 83 RDVLVGLHNTGQVVDVSFAEHVTEXAY 3
R+VLVG HNT ++ D+ A V++ Y
Sbjct: 289 RNVLVGEHNTCKISDLGLARDVSQDIY 315
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 83 RDVLVGLHNTGQVVDVSFAEHVTEXAY 3
R+VLVG HNT ++ D+ A V++ Y
Sbjct: 464 RNVLVGEHNTCKISDLGLARDVSQDIY 490
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 434 NFCTCCDMTLKGPRQVLFNHIRQKKTFVTR 523
NFC C M +KG RQ + R F TR
Sbjct: 484 NFCKCESMLIKGARQKMSTRDRDYVLFKTR 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,820,989
Number of Sequences: 59808
Number of extensions: 520643
Number of successful extensions: 1618
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -