Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30128
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)                  105   5e-23
SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)                 36   0.034
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.044
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)                   33   0.31 
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)                 32   0.55 
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         31   0.96 
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   31   1.3  
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)                 30   1.7  
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 30   1.7  
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)             29   2.9  
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)                 29   3.9  
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)                       29   5.1  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)                  28   8.9  
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
          Length = 219

 Score =  105 bits (251), Expect = 5e-23
 Identities = 52/83 (62%), Positives = 61/83 (73%)
 Frame = +1

Query: 262 NVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLEA 441
           NVGLTTLK FP LP LRKLELSDNRIS+GL  L+G  KL HL+LSGNKIKDLETL+PLE 
Sbjct: 47  NVGLTTLKNFPKLPNLRKLELSDNRISSGLQNLTGSPKLTHLSLSGNKIKDLETLEPLEK 106

Query: 442 XXXXXXXXXXXXXVTSIEDYKSR 510
                        VT+++DYK++
Sbjct: 107 LSNLKSLDLFNCEVTNVDDYKNK 129



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
 Frame = +2

Query: 152 RGRDPSQ--VKELNLDNCRSTNIVGLTDEYTNLQIL 253
           RG  P+   + EL LDNCRST+IVGLTDE+  L+IL
Sbjct: 8   RGSKPAARPITELILDNCRSTSIVGLTDEFVKLEIL 43


>SB_53824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 238 KFTNTDLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGC-KKLAHLNLSGNKIKD 414
           +F   D ++  +  ++GFP L  L+ + L++NR+      L  C   L  + L+ N +++
Sbjct: 533 QFDTIDFSDNDIRKIEGFPLLKRLKTILLNNNRVCRVAEGLGECLPNLESIILTNNAMQE 592

Query: 415 LETLKPLEA 441
           L+ L+PLE+
Sbjct: 593 LKDLEPLES 601


>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
          Length = 534

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +1

Query: 259 NNVGLTTLKGFPTLPMLRKLELSDNRISNG--LTFLSGCKKLAHLNLSGNKIKD 414
           NN+ + +++    LP+L  L+++ NR+++   +  L+ C+KL+ ++LS NKI D
Sbjct: 65  NNI-IRSIENIACLPVLNTLQIAHNRLASAGDIKELASCQKLSIVDLSYNKIDD 117


>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 292 PTLPMLRKLELSDNRISNGLTFLS---GCKKLAHLNLSGNKIKD 414
           P+L +L  ++LS N +SN     S   G K + H+NLS NK+ D
Sbjct: 467 PSLKLLEHIDLSRNNLSNWTRMTSTFDGLKSIKHINLSANKMCD 510


>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
          Length = 852

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
 Frame = +1

Query: 307 LRKLELSDNRISN---GLTFLSGCKKLAHLNLSGNKIKDLETL 426
           L+KL+LS+NRI++   G+  L+    L  LNLSGN I +++TL
Sbjct: 623 LQKLDLSNNRITSVPVGMPCLA--TSLQTLNLSGNNISEVKTL 663


>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 298 LPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKD 414
           L +L+ L+LS+N++      L+ C KL  LNL  N IKD
Sbjct: 177 LHVLKVLDLSENKLEAIPCELADCLKLKDLNLKENPIKD 215


>SB_47473| Best HMM Match : LRR_1 (HMM E-Value=2.8e-10)
          Length = 658

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 259 NNVGLTTLKGFPTLPMLRKLELSDNRISN-GLTFLSGCKKLAHLNLSGNKIKDLETLKP 432
           NN+     +GF  L  L  L +SDNRIS   +   +  + L  L++SGNK     TL P
Sbjct: 102 NNIHTIRARGFAGLNKLEYLNMSDNRISTWEIDRDTELRSLVVLDISGNKALS-NTLPP 159


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +1

Query: 271 LTTLKGFPTLPMLRKLELSDNRISN--GLTFLSGCKKLAHLNLSGNKIKDL 417
           + ++KG    PML++++L +N+I +   + ++   K L +LNL  N I+ L
Sbjct: 203 IRSMKGLQGHPMLQEVDLQENQIIDIAEVRYIRELKLLRNLNLQSNPIQSL 253


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 307 LRKLELSDNRISN-GLTFLSGCKKLAHLNLSGNKIK 411
           ++ L L+DN +   G   LSG K L +LNL+ NK++
Sbjct: 52  VKNLTLADNDLEEIGNASLSGLKSLLYLNLANNKLR 87


>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
          Length = 481

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 307 LRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLE 438
           L  L L +N+IS  +  L  C++L+ L L GN I  +E L  LE
Sbjct: 75  LTHLYLQNNKISR-IEGLDHCRRLSKLYLGGNSITVIEGLDKLE 117


>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +1

Query: 253 DLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKI 408
           DL+   ++ ++    L  LR L L+ N I   +  +SG + LA LNL  NKI
Sbjct: 235 DLHGNRISKIENLSHLTELRVLNLAGNEILK-VCNISGMRSLAELNLRRNKI 285


>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 91  VVQSVNWYIYEHGKEDHLGTQREGSFTGERT 183
           ++  V++Y Y H  +D LG   EG  T ERT
Sbjct: 25  LILGVSFYRYYHNSKDLLGKFNEGILTNERT 55


>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
          Length = 586

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 243 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 157
           +F +++ KPT  V+L    F+ F C+G L
Sbjct: 2   EFAHNATKPTRSVMLYTEFFNQFDCDGDL 30


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +1

Query: 232 IYKFT---NTDLNNVGLTTL--KGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLS 396
           + KFT     DL+    T++    F  L  L  L+LS NRIS       G  KL  LNL 
Sbjct: 81  LLKFTALKELDLSRNFFTSILASAFNRLSSLEVLKLSKNRISTIRGAFWGQNKLQQLNLE 140

Query: 397 GNKIKDLE 420
            N++  ++
Sbjct: 141 RNRLSHIQ 148


>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
          Length = 459

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 335 LLSDSSNFLSIGSVGKPLSVVRPTLLRSVFVNLYIHLL 222
           L + S   L++ SV +   VV+P+L R  F   Y+H+L
Sbjct: 140 LAAASIQTLALTSVNRYFKVVKPSLYRKYFTMHYLHVL 177


>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
          Length = 680

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 271 LTTLKG-FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 417
           LT+L   F  L  L +L L++N +      L    KL  LNL+GNK++ L
Sbjct: 75  LTSLPDVFARLGNLTELHLNENSLEELPESLGKLSKLRVLNLTGNKLEKL 124


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 243 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 157
           +F +++ KPT  V+L    F+ F C+G L
Sbjct: 60  EFAHNATKPTRSVMLYPEFFNQFDCDGDL 88


>SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = -3

Query: 311 LSIGSVGKPLSVVRPTLLRSVFVNLYIHLLNQLCSYFCSYPDSVLSPVKDPSLCVPR*SS 132
           L IG V +P  VV   L       L  HL+    +YFCS   S+LS     +L V R ++
Sbjct: 67  LIIGIVTEPAFVVYHVLEAKRGRQLNAHLMFVHVTYFCSLTTSLLSIA---ALAVDRCNA 123

Query: 131 FPCS 120
             CS
Sbjct: 124 ITCS 127


>SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)
          Length = 391

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 307 LRKLELSDNRISNGLTF--LSGCKKLAHLNLSGNKIKDL 417
           L  L+LS N    G +F  LS   KLA LNLS   +KD+
Sbjct: 183 LSTLDLSQNPKITGHSFKYLSKLTKLASLNLSATGVKDV 221


>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 283 KGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 417
           K F +L  L KL LS NR+ +    +    +L  L L GNKI ++
Sbjct: 102 KEFGSLAKLEKLNLSGNRLESFGPSIFRLTQLKVLLLGGNKINNV 146


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 307 LRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKI 408
           L+KL+LS NRI +    +     L  LNL+ NKI
Sbjct: 487 LKKLDLSRNRIKSIPAQIEELSNLETLNLASNKI 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,998
Number of Sequences: 59808
Number of extensions: 330529
Number of successful extensions: 1023
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)