Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30125
(751 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 106 2e-23
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8) 29 4.0
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 29 5.3
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39) 28 9.3
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 9.3
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 106 bits (255), Expect = 2e-23
Identities = 64/111 (57%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+VRK+LQL RLRQINNGVFVRLNKAT NML I +PYIA+GYPN + SV V
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK-SVRELIYKRGYGKV 159
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFK 708
D +L+ NSIVEK L KH IICVED VG NFLWPFK
Sbjct: 160 DKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFKEAS-NFLWPFK 209
Score = 64.5 bits (150), Expect = 9e-11
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +2
Query: 254 RIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
R KE DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPK K L
Sbjct: 59 RQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 87 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASRN 266
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEY +
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 267 V 269
V
Sbjct: 63 V 63
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 285 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 422
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
Length = 314
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 538 VDSPS*VDNVYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTR 684
VDS + + NVY ++SNS V + +I C +S+M ++G+K +R
Sbjct: 174 VDSENAMLNVY-AISNSTVFYDVRVLNITCCRNSTMSREILGKKAAESR 221
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 482 GSAILSIFTVALFRRTNTPLFIWRSLNSCRTLRTSVKLG*YH 357
G L + VAL + T T F W + C R VK+ YH
Sbjct: 646 GHKTLCLVVVALVQFTYTASFCWMLVEGCYLYRVIVKVFNYH 687
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 552 LSGQRIPITFQQHC*EEAP*TPHYLC*GLIHEIFTCWEKSSSYAS*FPVALQ 707
L GQR+ +HC A Y+C G + + CW +S P+ALQ
Sbjct: 692 LLGQRLEAEGDEHC---ANSMVCYICAGNVEKFVACWSRSMPMEP-SPLALQ 739
>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
Length = 1814
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -3
Query: 680 VTGTFLPTSEDL-MDESSTQIMWCLWSLFSTMLLE---SDWYTLSTQ 552
VT P ++DL D S+T+ MW L+ F+T L E DW + ++
Sbjct: 1118 VTEPHFPVADDLRQDISTTEDMWRLFEEFNTGLEELAKEDWISFRSR 1164
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVP 322
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 189 RSSAIKKKREIF-KRAEQYVKEYASRNVMKSD*PDKHAIVATTTFPGKPN 335
+ AIKKKREI + V E + V + P KH +P P+
Sbjct: 402 KKQAIKKKREIIDSHLDAVVAELGKQRVERILNPKKHVNTGLKNYPRSPS 451
>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3212
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 546 RIHVCILTHGHSLVGVSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGETW 367
RIH+C L L + RL + HI+SSL++ + I LA+++ + F +
Sbjct: 1427 RIHLCDLAGSERLKKTHAAGDRLSEAQHINSSLLE-LGNVIHALAEAEDKKTHVPFRNST 1485
Query: 366 L 364
L
Sbjct: 1486 L 1486
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,705,834
Number of Sequences: 59808
Number of extensions: 463618
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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