Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30114
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    33   0.24 
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  33   0.31 
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   2.2  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            29   3.9  
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +3

Query: 183 SYHVVPVAAHHGAPTIHAAPVLVHTMNTRQYIMETSLNMKIMMLIPNMHLNTKSKTLTLG 362
           ++HVV + A+    TI A  V V T+    +++    N+ ++++  N+H+ T     T+ 
Sbjct: 280 NFHVVTIRANLHEVTIRA-DVHVVTIRGNLHVVTIRANLHVVIIRANLHVVTIRANSTVP 338

Query: 363 T*RANTRLATV 395
             RAN  L T+
Sbjct: 339 IIRANLHLVTI 349


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 293  QYEDYDAHPKYAFEYKIEDPHTGDLKSQH---ETRDGDVVKGYYSLHEADGSIRVVEYSA 463
            +YE   +H K +   K++  H GD  + H    TR G  V  Y ++  +  S+ + E+SA
Sbjct: 1185 RYEGEWSHGKISGFGKMKYMH-GDTYTGHWRDNTRHGHGVMSYGAMSSSAASVYIGEWSA 1243

Query: 464  DKHNGFNAV 490
            D+ NG+  +
Sbjct: 1244 DRKNGYGTM 1252


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 404  KGYYSLHEADGSIRVVEYSADKHNGFNAVVKHTAPQSM-PSLYNST 538
            KG Y  H+ DG  R +EY +    G+     HT P  + P++Y  T
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY-LPPAHTRPYPVQPNIYRLT 1786


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/75 (22%), Positives = 27/75 (36%)
 Frame = +2

Query: 284 DQPQYEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSA 463
           D    +DY  + + A  YK  +    D  + HE  D D      + ++        +  A
Sbjct: 568 DNRASDDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEA 627

Query: 464 DKHNGFNAVVKHTAP 508
           D +   N    H AP
Sbjct: 628 DNYKTNNDTTNHEAP 642


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 126 SSQSIIRHD----VTHGHGNEGQSYHVVPVAAHHGAPTIHAAPVLVHTMNTRQYIMETSL 293
           SS SII H     + H H +    +H   +  HH +  IH    ++H  ++    + +SL
Sbjct: 336 SSSSIIHHHPSSIIIHHHPSSSIIHHPSSIIHHHPSSIIHHPSSIIHHPSSSSSSLSSSL 395

Query: 294 N 296
           +
Sbjct: 396 S 396


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 296 YEDYDAHPKYAFEYKIEDPHTGDLKSQHE 382
           Y+ YD + KY F +K  DP+  D+    E
Sbjct: 140 YDKYDKYDKYDFPWKAIDPNLPDMPEDKE 168


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 272  VHHGDQPQYEDYDAHPKYAFEYKIEDPHTGD 364
            V  GD    ++Y A+   A+ Y +EDP T D
Sbjct: 1046 VTDGDHISDDEYRAYEDGAYTYPVEDPFTDD 1076


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,009,740
Number of Sequences: 59808
Number of extensions: 507543
Number of successful extensions: 1430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)