Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30113
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)                128   6e-30
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)                  36   0.025
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)                 29   3.7  

>SB_57290| Best HMM Match : E1_dh (HMM E-Value=1.4e-05)
          Length = 266

 Score =  128 bits (308), Expect = 6e-30
 Identities = 57/85 (67%), Positives = 64/85 (75%)
 Frame = +3

Query: 255 LYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQC 434
           LYESQRQGRISFYMTNYGEE  H GSA+AL  +DL+  QYRE GV ++RG T+   +NQC
Sbjct: 113 LYESQRQGRISFYMTNYGEEATHFGSAAALEMEDLIMGQYREAGVLMWRGFTLADFMNQC 172

Query: 435 YGNCEDPGKRRQMPVHYGSKHHNMV 509
           Y N  D GK RQMPVHYGSK  N V
Sbjct: 173 YANQHDAGKGRQMPVHYGSKELNFV 197



 Score = 36.3 bits (80), Expect = 0.025
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +1

Query: 61  FPGA-RAPYVSEMKFFNETSYEPI-PIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQ 234
           +PGA    +  +++F +    + I P+YRVMD  G+II  + +P +   T    Y  M  
Sbjct: 50  YPGAMNCSFTEKLEFVDPMDPQGIIPVYRVMDRQGKIIIDSHDPKVTYCT----YLKMTL 105

Query: 235 LSHMDKI 255
           L+ MD+I
Sbjct: 106 LNTMDRI 112


>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
          Length = 238

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +2

Query: 530 TXMPQAVGAAYAYKXXXXXXXXXXXXXSVTGAASEGDAHSAFNFAGYVRLSCY*CCAGNK 709
           T +PQA G+ YA++                GAASEGD  +A NFA  ++      C  NK
Sbjct: 2   TQVPQASGSGYAFRTANEDKVAACYFGE--GAASEGDFPTALNFAATLKCQTLFLCRNNK 59


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 563 HKRLQQPGAXVFLMD*ILYHVVVLASVMDRHL--SPFPGILAVSVTLVHKSRNSHPSV*K 390
           H RL    A       I+  + +L     RH   SP P  +A+ +T++H   N HP++  
Sbjct: 578 HHRLNHHPALPSSPSFIIVSITILHCHHHRHSPSSPSPSCIAI-ITVIHYRHNHHPALSS 636

Query: 389 HSYFSVLT 366
              F+++T
Sbjct: 637 SPSFTIVT 644


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 429  QCYGNCEDPGKRRQMPVHYGSKHHNMVQYLVH-*EHXCPRLLEPLMPTKEFP 581
            +C G    P KR ++P   G +     Q + H  +H  PRL     P + +P
Sbjct: 937  ECLGKITPPAKRERLPSATGLQGLGKKQRVAHSPKHLSPRLSSNANPIRRYP 988


>SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -2

Query: 279 DLVFVIHIDFIHMAQLYHGFVHVNQRSLIQV--RFFIFVDDLSVIIHNSINRNWLVTSFV 106
           D V  + I   H A L++      +R   QV  R  ++ DD +++ H+   +   +T F 
Sbjct: 159 DCVDGVSIQTRHNADLFNVAHFKAKRKTCQVIVREMLYADDSALVAHDVEMKRQTLTQFP 218

Query: 105 EEFHFTHVRCSCARKFCYLTTAI 37
            E H  +      + F YL + I
Sbjct: 219 GEIHVRNETLVQTKDFVYLGSTI 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,875,696
Number of Sequences: 59808
Number of extensions: 475065
Number of successful extensions: 1153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)