Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30111
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4472| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)                     28   8.5  

>SB_4472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 564 RCIVLKPCFETSDYCNVSIKRPFGH 638
           + + LKP  ET  Y  V+ K+PFG+
Sbjct: 73  KVLALKPVLETRGYDIVNYKKPFGY 97


>SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)
          Length = 471

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 698 SCGKVPAQAQKASTGAFPIGMAKRPFNTN 612
           SC  V  Q  KA +GA+ I  AK PF T+
Sbjct: 45  SCQVVYIQTPKAESGAYWIKGAKEPFQTH 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,706
Number of Sequences: 59808
Number of extensions: 317328
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)