Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30092
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)          32   0.48 
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           31   0.63 

>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
          Length = 658

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 552 PINFTSHFWQG*HCPC-LSVPTSPKYLKPCSHT*PEGTSSSSFCPC 418
           P N T    QG  CPC ++ PT      PC  T P  T   + CPC
Sbjct: 386 PCNMTGPTQQGNQCPCNMTGPTQQGNQCPCVMTGP--TQQGNQCPC 429



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -2

Query: 552 PINFTSHFWQG*HCPC-LSVPTSPKYLKPCSHT*PEGTSSSSFCPC 418
           P N T    QG  CPC ++ PT      PC    P  T     CPC
Sbjct: 400 PCNMTGPTQQGNQCPCVMTGPTQQGNQCPCIMAGP--TQQGKQCPC 443


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 555 FPINFTSHFWQG*HCPC-LSVPTSPKYLKPCSHT*PEGTSSSSFCPC 418
           FP N      QG  CPC ++ PT      PC+   P  T   + CPC
Sbjct: 95  FPCNMAGPTQQGKQCPCVMAGPTQQGNQCPCNMAGP--TQQGNQCPC 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,358,799
Number of Sequences: 59808
Number of extensions: 523756
Number of successful extensions: 958
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)