Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30090
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               30   2.5  
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)                  29   5.8  
SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)                 29   5.8  
SB_9175| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)              28   7.7  
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)                 28   7.7  

>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 291 PSIFVRRCTIVRLCRISGCDQDHFS 365
           P+   RRC   R C +SGC + H S
Sbjct: 788 PNHISRRCKTYRACLVSGCSEKHHS 812


>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 454 WLEHREQSMLRKMVIHERLWTSKKILRKQLEK 359
           W+  +E   + + +    LW S+KIL+ QLEK
Sbjct: 171 WISEQELEDIDEEIRRLELWLSRKILKHQLEK 202


>SB_29911| Best HMM Match : 7tm_1 (HMM E-Value=0.0026)
          Length = 197

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 321 VRLCRISGCDQDHFSSCFLSIFL---LVHNRSWITIFRNILCSRCSSHRAH 464
           + LCRI    ++HF++ F  +FL   L+    ++ I+R IL  R  S+ AH
Sbjct: 140 IALCRIFVTKENHFTTPFTVMFLTVILITLSIYLEIYRQIL--RVCSNNAH 188


>SB_54444| Best HMM Match : zf-CCHC (HMM E-Value=0.035)
          Length = 671

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 291 PSIFVRRCTIVRLCRISGCDQDHFS 365
           P+   RRC   + C +SGC + H S
Sbjct: 157 PNHISRRCKTYKACLVSGCSEKHHS 181


>SB_9175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 392 RPQPLMDHHLSQHTLLTVLQ-PSRAYSAHATPAVATY 499
           +P P    HL     +  LQ PS  YS+H  P  A Y
Sbjct: 21  QPSPTYSSHLLPTAAIYYLQQPSTTYSSHLLPTAAIY 57


>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
          Length = 292

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 429 ILCSRCSSHRAHTPPTLHPQLRRTPRLRC*GDRSRCSLRCTC-GCSPRPS 575
           + C   S  R++    +HP  RR+ R+ C     R S R +C   SPR S
Sbjct: 130 VFCVHPSPRRSYRVSCVHPSPRRSYRVSCVQPSPRRSYRVSCVQPSPRRS 179


>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
          Length = 330

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 224 RLEQHRRQRCGHRERCELSKKRPKTQ 147
           R   H R+ C +R+R  L+ KRPKT+
Sbjct: 192 RHSHHYRRICRYRQRRPLTPKRPKTR 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,238,874
Number of Sequences: 59808
Number of extensions: 447997
Number of successful extensions: 1156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)