Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30083
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)                  31   0.90 
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   30   2.7  
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9)                   29   3.6  
SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
          Length = 377

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 268 SSASAGGIGTIPSSAGKSHRYASASCVRGRSTLLPY 375
           S A A G GT P +   +HR      V G +T +PY
Sbjct: 332 SVAQAAGTGTAPDTVRNTHRICGRRAVSGSATGIPY 367


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 216 DLAVFLFTLHRLD--GDGSEEHRKARTLHTFLSRLKT 112
           D+ VF F LH +D  GD  EE+  A      LSRLKT
Sbjct: 414 DVIVFNFGLHDIDCSGDMPEEYTSAENYSKNLSRLKT 450


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 223 PRRPRSFPLYTSSPRRRWERRA 158
           PR PR  P++ S PRR W R A
Sbjct: 167 PRLPRLGPVWASGPRRGWSRGA 188


>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = +1

Query: 202 ENCEVGVVLERNSLIVLSLTRPSSASAGGIGT-IPSSAGKSHRYASASCVRG-RSTLLPY 375
           E+C   ++ E  S +  ++TR    S+G +G  + +   K +   S + VR     + P 
Sbjct: 60  ESCVKPLLAECGSPVSTAMTRGMHVSSGNVGDFVTALLKKEYNRPSTAVVRAVECDMFPN 119

Query: 376 I----LLKYSKLRLRRNRILLHFASSPC 447
           I    +L Y KLR+     ++H A   C
Sbjct: 120 ISTLKMLHYYKLRMPEASHIVHGAREAC 147


>SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9)
          Length = 916

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 445 CGSFRRRCLRLSSILTIRTT*SAARQRACQFPQSSQEYPW 564
           CGS   RC RL ++     T SA+   +C+ P +S +  W
Sbjct: 571 CGSLALRCGRLMALAAGGVTHSASCGLSCRHPNASADARW 610


>SB_2033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 710 KQETSKGAWVLKR*TSNQNFKWVVNKIHI 796
           + E SKG WV +  TS+   KW   K H+
Sbjct: 425 ENEASKGEWVRRNLTSDVYVKWAYLKRHV 453


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 QLTHRAVVNKTIVCLCGRDRNNPFER 311
           ++ H    N T VC+ G  RN+P E+
Sbjct: 717 EVAHTRTSNNTSVCIIGEQRNHPVEK 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,855,937
Number of Sequences: 59808
Number of extensions: 450693
Number of successful extensions: 1377
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)