Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30081
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  33   0.25 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        33   0.25 
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                32   0.58 
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        31   1.3  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.1  
SB_51684| Best HMM Match : zf-CCHC (HMM E-Value=0.06)                  29   4.1  
SB_26650| Best HMM Match : zf-CCHC (HMM E-Value=0.06)                  29   4.1  
SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)                   29   5.4  
SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)         28   9.4  
SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)         28   9.4  
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +2

Query: 254  KQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIK-----QNLEKDYGLEQEF 418
            K    YNDE Q ++++  +  R+Y    +TV E +S  R +K     +N+E DY  +++ 
Sbjct: 933  KIKAKYNDEIQTLIEEQRELVRKYESQIKTVVE-DSKTRILKLINDHENVETDY--KKQL 989

Query: 419  ASLDGDCFEYEDKEYV 466
             +L  +    ED+  V
Sbjct: 990  KALKNEILRVEDEHEV 1005


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/68 (22%), Positives = 37/68 (54%)
 Frame = +2

Query: 269  YNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEY 448
            Y DE ++     S+ +    D +  + E+E  ++N ++++EK   L+ E  +++    ++
Sbjct: 2019 YRDELEREEQAISNLQNTIEDRDAQINELEYVLKNFRRDMEK---LQGEMVAVNASSTDF 2075

Query: 449  EDKEYVYK 472
            +D++ V K
Sbjct: 2076 KDQQLVSK 2083


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/59 (27%), Positives = 34/59 (57%)
 Frame = +2

Query: 251 VKQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASL 427
           V   ++ + + + + +Q  + +RQ  + E+TV E+ES ++  K+++ +   LE E A L
Sbjct: 357 VSSKEAESQQVRNLQNQLEETKRQLENREKTVLELESGLKEKKEDVSR---LELERADL 412


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 487 EGNTKIQDGGMEVGLGNWGEWAGPENNKYSVDEHTQMEIACRNGPSSKQPTG*CSTCGLG 666
           +G      G +   +GNWGEW G    KYS  +++  +  C NGP+          C   
Sbjct: 18  DGGASTSIGYVSSLIGNWGEWNG-SPYKYSRMKYSDGQ-NCWNGPNRSTQVNALGPCYFA 75

Query: 667 KPSI 678
           K ++
Sbjct: 76  KTAM 79


>SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 591 TNGNCLPEWSQFETTNWLMFNLWTWETKYHHSVTETLSRCEIPN 722
           TNG C P W      NWL   L    +KY   +T+ +   EI N
Sbjct: 17  TNGKCNPHW------NWLAVKLMWLLSKYPSGITKAIILAEIQN 54


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +2

Query: 254  KQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFASLDG 433
            +++K  N+  Q   D+    + +  DA+    E+E  IR ++Q L +    E+E  +  G
Sbjct: 1707 QEAKGRNNMLQ---DRMQQMKNEQADADVRRMELEGQIRQLQQILRQQKEAEEELVARIG 1763

Query: 434  DCFEYEDKEYVYKLCMFQK 490
               E E +E   +L  FQ+
Sbjct: 1764 KLQE-EKRELQERLAKFQR 1781


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/107 (20%), Positives = 50/107 (46%)
 Frame = +2

Query: 245  DCVKQSKSYNDETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEKDYGLEQEFAS 424
            D +K+S   +DE +K  D+A +        ++T+++I       +Q L ++    +E   
Sbjct: 1122 DDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLKQILK--EKEEQKLLEEKRKAEEKQK 1179

Query: 425  LDGDCFEYEDKEYVYKLCMFQKVTQKSKMVVWR*VLVIGENGQVLKT 565
            L+ +  E   +E + +    QK+ ++S ++V      +G   +  +T
Sbjct: 1180 LEEEDKELTPEEQMAEKLRRQKIVEESDLLVAMDTFGVGTQEEASRT 1226


>SB_51684| Best HMM Match : zf-CCHC (HMM E-Value=0.06)
          Length = 171

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 344 VREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEYEDKEYVYKLCMFQK 490
           VR+++ NI+   + L  DY   Q   S +  C+    + +VY  C+ Q+
Sbjct: 106 VRKVDKNIKKEDRELTHDYNRPQSRTSANIVCYTCGLRGHVYARCVRQR 154


>SB_26650| Best HMM Match : zf-CCHC (HMM E-Value=0.06)
          Length = 233

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 344 VREIESNIRNIKQNLEKDYGLEQEFASLDGDCFEYEDKEYVYKLCMFQK 490
           VR+++ NI+   + L  DY   Q   S +  C+    + +VY  C+ Q+
Sbjct: 168 VRKVDKNIKKEDRELTHDYNRPQSRTSANIVCYTCGLRGHVYARCVRQR 216


>SB_44584| Best HMM Match : DEAD_2 (HMM E-Value=0.12)
          Length = 540

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 467 YKLCMFQKVTQKSKMVVWR*VLVIGENGQVLKTINTLLMNIHKWKLLAGMVPVRNNQLVN 646
           Y L + +   +   + +   V+VI E   +L+TIN    NIH  ++    +P++N++  N
Sbjct: 6   YNLLLHKSTREACGIKLENNVVVIDEAHNLLETIN----NIHSVEVSGAQIPIQNSKATN 61


>SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +2

Query: 254 KQSKSYNDETQKIVDQASDARRQYTDAE----RTVREIESNIRNIKQNLEKDYGLEQEFA 421
           +Q +    ET+K  D   + +RQ  + E       RE+ S+   I++   +   LE E A
Sbjct: 125 EQLRDSKGETKKYQDDLLNTKRQLAETEWEKGSLTRELSSSKSIIEKMKTEKKNLENEVA 184

Query: 422 S--LDGDCFEYEDKEYVYKLCMFQKVTQKSKMVV 517
           S  L  +  + E  E +     FQK+  K K VV
Sbjct: 185 SLKLKQETIKEEVVEEIEGDEEFQKLQNKYKQVV 218


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 275  DETQKIVDQASDARRQYTDAERTVREIESNIRNIKQNLEK 394
            DE++ I +QA +++ +  + E  +      I N+++ LEK
Sbjct: 1287 DESKDISEQAEESKHRQLELESKLNAANKRISNLEERLEK 1326


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 299 QASDARRQYTDAERTVREIESNIRNI-KQNLEKDYGLEQEFASLDGDCFEYEDK 457
           Q  DA R   D    + + E+ ++++ KQ+ EK+  L +  +    D F Y+ K
Sbjct: 48  QLQDAMRNVEDLSEKLADQEAILKSLRKQSEEKERQLRENLSQSQKDNFSYQSK 101


>SB_21085| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=2.1e-07)
          Length = 219

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 673 LVSQVHRLNINQLVVSNWDHSGKQFP 596
           LV+ +HRL +   VV N+D  G+ FP
Sbjct: 195 LVANIHRLGVTNTVVCNYD--GRAFP 218


>SB_41998| Best HMM Match : Nol1_Nop2_Fmu (HMM E-Value=3.2e-16)
          Length = 467

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 673 LVSQVHRLNINQLVVSNWDHSGKQFP 596
           LV+ +HRL +   VV N+D  G+ FP
Sbjct: 443 LVANIHRLGVTNTVVCNYD--GRAFP 466


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 568 YCFQDLPILPNYQDLPPYHHLGFLCYLLEHTQFVYIFFVFIFK 440
           YCF D P      D P  HHL  + Y+  + +   +    IFK
Sbjct: 71  YCFSDYPFPDETPDFP--HHLHMMQYVHNYAKHFNLLRHIIFK 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,960,281
Number of Sequences: 59808
Number of extensions: 497172
Number of successful extensions: 1392
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)