Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30077
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)                    30   2.1  
SB_12293| Best HMM Match : OATP (HMM E-Value=0)                        29   4.8  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   4.8  
SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +1

Query: 391  CSRSCLERCPRPLMER-CP--CCCSFMERCPSSFLECCRICSPPVAETPEV 534
            C RSC E CP    +  CP  C  S    CP     CC     P+A+   V
Sbjct: 1178 CKRSCEEGCPEQCCQNGCPVECLSSCKPHCPP---RCCFTVLIPIADNQSV 1225



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 385  ERCSRSCLERCPRPLMERCP--CCCSFMERCPSSFLECCRICSPP 513
            E+C   C E C +P    CP  CC      CP++ +E C+   PP
Sbjct: 1227 EKCPAVCKETC-KP---ECPLSCCLKDARGCPATCVEDCKPGCPP 1267



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +1

Query: 391  CSRSCLERC--PRPLMERCPCCCSFMERCPSSFLECCRICSP 510
            C   C  RC    PL   CP  CS     P   L CC +C P
Sbjct: 1652 CKPDCPARCCTTEPL-SACPATCSPDSCRPECPLICCSVCPP 1692



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 397  RSCLERCPRPLMERCPC-CCSFMERCPSS 480
            + C E CP+     CP  CCS +  CP++
Sbjct: 1718 KECKESCPKVCGPGCPVQCCSDLNICPAN 1746


>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
          Length = 567

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 748 GLPPVNQARLKQSGLSPNDWFPGNSSN 828
           GL P +Q  +  S L+ ND+FP N+SN
Sbjct: 44  GLQPESQEVVVTSSLATNDYFPDNNSN 70


>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
          Length = 1446

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 656 DWKASRFTRNLECFRFNQLIGTGGLPSWAIPGCPRLTKLGLN 781
           D + S  T    CF F Q IGT G+ ++ IPGC      G+N
Sbjct: 764 DLRRSCRTAARYCFIF-QFIGTWGVLTFLIPGCKTSQIAGIN 804


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 661 ESFPVHQELGMLPVQPINWNRRPPFLGNSGLP 756
           +  P HQ   +LP Q I  ++RPP L +  LP
Sbjct: 9   QQIPHHQRPPLLPSQQIPHHQRPPLLPSQQLP 40


>SB_48356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 242 HTRSPQARAAHISALQQASKNNPNPNDDGSYDPRWDNEE 358
           + R   ++A  I  L++ SK + + +DD  YD   DNE+
Sbjct: 38  YQRQQVSKATGIKPLERESKEDNDRDDDDDYDDDVDNED 76


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 676 HQELGMLPVQPINWNRRPP 732
           H+ +G+L ++PI+ NRRPP
Sbjct: 695 HRVIGILRIEPISDNRRPP 713


>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 8   RHSDSWKSLVFQQRYQPTKTNTIFIFLSLFHFCASFHYEN 127
           R    W  ++F +  Q  K   IF+  S    CA  H+EN
Sbjct: 460 RRQKDWFEIIFWESGQANKHFPIFVRASDLEACARTHHEN 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,429,072
Number of Sequences: 59808
Number of extensions: 578636
Number of successful extensions: 1832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)