Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30008
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066) 29 1.4
SB_28701| Best HMM Match : DUF680 (HMM E-Value=6.7) 29 1.4
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 29 2.5
SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.8
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 27 5.8
SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3) 27 7.7
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 7.7
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 65.7 bits (153), Expect = 2e-11
Identities = 31/38 (81%), Positives = 32/38 (84%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+EMGGM LLF
Sbjct: 1047 GAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGALLF 1084
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 1024 YIPTAAAFGGLCIGALSVLADFLGAIGSG 1052
>SB_54084| Best HMM Match : zf-CCCH (HMM E-Value=0.00066)
Length = 731
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 235 FYCRFCSNRHH*VYVFISGSVGCEYIVVLYRKN 333
F C+ C NRH+ Y F+ G Y V Y +N
Sbjct: 527 FLCKGCENRHNGYYAFLDYRKGLWYKVRPYPRN 559
>SB_28701| Best HMM Match : DUF680 (HMM E-Value=6.7)
Length = 294
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 301 IQHYQI*KRTPNDVDS-SRNDNKNGAERSGPTAAIITRLR 185
+ H+++ ++ N VD S N+N AER+ PT A TR R
Sbjct: 67 LAHWKMDEQLGNTVDDDSGNENHGTAERASPTRAKFTRGR 106
>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 905
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -1
Query: 273 HLMMSIRAETTIKTELNAAVRLPLSLRD---LEEQCAHAAHLRLFLDKDLEVLVNDGDGE 103
HL+++ T++ AVR+PL+L D E Q + ++ + D V DG
Sbjct: 361 HLLVTFYNGQTVEIGAGVAVRIPLALFDRLVTELQLPESQRRKITIATDSTPPVYDG--- 417
Query: 102 QYPSARSRWPRGSRPALTEPRCTV 31
+ P A + W R P ++ R V
Sbjct: 418 RAPPAETTWQRPFSPPKSQRRNNV 441
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = -3
Query: 280 KRTPNDVDSSRNDNKNGAERSGPTAAIITRLRRAVCSCRPSPLVP*QRSRSTGK*W*RRA 101
K PN+ D + A+ SG ++I + P + + T +A
Sbjct: 722 KHLPNNADRDVFEEMRAAKESGTLDSLIEAAENMRIADLPDTANEIEHAPPTTVINPPQA 781
Query: 100 VSQCPEPMAPRKSASTDRAPMHSPPNAAA 14
PEP+APR S S P +PP AA
Sbjct: 782 KPAEPEPLAPRPS-SPQTQPAPAPPEPAA 809
>SB_51054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -1
Query: 108 GEQYPSARSRWPRGSRP----ALTEPRCTVLRTRPPSG 7
G AR+R PRG R LTEP TV R R P G
Sbjct: 99 GPPMDRARARSPRGRRQFKISLLTEPDTTVDRARYPRG 136
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 30 GLCIGALSVLADFLGAIGSGHWDT 101
G+ + + + F+ I SGHWDT
Sbjct: 35 GITLNTVDSVESFVNEINSGHWDT 58
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 85 EPMAPRKSASTDR-APMHSPPNAAAV 11
EP AP + T AP+ SPP+AAAV
Sbjct: 265 EPPAPPPTTPTSAGAPLSSPPSAAAV 290
>SB_35522| Best HMM Match : AT_hook (HMM E-Value=7.3)
Length = 250
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 285 YENVHLMMSIRAETTIKTELNAAVRLPLSLRDLEEQCAHAA 163
Y N ++I A ++K+ L A++ PL R L+ H+A
Sbjct: 49 YNNQDNKLTITAHASMKSTLTPALKAPLHPRPLQHLYEHSA 89
>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 404
Score = 27.1 bits (57), Expect = 7.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 22 RSEDCASGLCQCWPTS 69
+SE C+ GLC CW ++
Sbjct: 35 KSEKCSKGLCCCWSSA 50
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -1
Query: 300 SNTTRYENVHLMMSIRAETTIKTELNAAVRLPLSLRDLEEQCAHAAHLRLFLDKDLEVLV 121
S +T E ++ M +R+ ++ T + +SLRD EEQ + ++ E+L
Sbjct: 65 SPSTPSEVIYQMSPVRSSPSLSTGSITPRKSKISLRDDEEQMPPPRKRKGTEGEEGEILS 124
Query: 120 NDGDGE 103
+ DGE
Sbjct: 125 DGSDGE 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,730
Number of Sequences: 59808
Number of extensions: 292250
Number of successful extensions: 1130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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