Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20041
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2) 52 5e-07
SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2) 39 0.005
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09) 30 1.7
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6) 29 4.0
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 29 4.0
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 28 7.0
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
Length = 233
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +1
Query: 670 VDYVCISDNYWLGTTKPCITNGLR 741
VDYVCISDNYWLG KPCIT GLR
Sbjct: 137 VDYVCISDNYWLGKEKPCITYGLR 160
>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
Length = 75
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 375 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDD 503
++TV +YGHLD QP + GW P+ + KLYGRG DD
Sbjct: 15 RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADD 57
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 32.3 bits (70), Expect = 0.43
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 1 RHEIKLPATKQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLK 177
R + ++ TK VP A + + V SSK VS + AT TLPE+ + +D D+ + +
Sbjct: 1656 RLDKRVTKTKSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADRRVA 1714
Query: 178 EAVAIPSVSCD 210
+ I S D
Sbjct: 1715 HVLPIASSESD 1725
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 30.3 bits (65), Expect = 1.7
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -2
Query: 457 SSKGSVSHPSDFNAGCTSK*P*IQTVFFFGSLPNTPTKTGGS*T-SLPSIV*KPTSLNSV 281
S+ + S PS + T P + S P+TP T + PS K TSL
Sbjct: 839 STPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTPCTPNTPSTNRKSTSLGMQ 898
Query: 280 VAPTSFNLSASSEPYGCNPHDI 215
+F + EP+ CNP D+
Sbjct: 899 ENIANFLNACQEEPFNCNPQDL 920
>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
Length = 702
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 390 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDK 506
I HLDV PA S W+ PF+ ++ ++GRG+ D K
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVK 500
>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
Length = 361
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1
Query: 70 SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 210
S SSK VS++ AT TLPE+ + +D D+ + + A+ I S D
Sbjct: 18 SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 289 NSVVAPTSFNLSASSEPYGCNPHDIS 212
NS+ A SF +AS EPY P D+S
Sbjct: 681 NSLYAQQSFTSAASFEPYTTKPKDVS 706
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 EIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMAT-EKTLPEIFKYVDQNKDSYKQLLKEA 183
E KL KQ V F ++ S K A++ + L ++ +DQ+KD+Y L KE
Sbjct: 1091 EAKLCEHKQQVEFLQSHMSSVSGQMKGQEAQVTQYTQQLEQLKAALDQSKDNYAVLEKET 1150
Query: 184 V 186
+
Sbjct: 1151 I 1151
>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 1 RHEIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSY 162
RH +K ++ +L F YH H S + S +A E I + +D ++S+
Sbjct: 56 RHPLKRQSSTRLWNFLNPYHNHLYPSRQFQSRNLAQETQCLIIIRSLDLTQNSF 109
>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 37 VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 210
+P P+ S SSK VS + AT TLPE+ + +D D+ + + + I S D
Sbjct: 8 IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,126,801
Number of Sequences: 59808
Number of extensions: 502547
Number of successful extensions: 1563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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