Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20018
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)               51   1e-06
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)                      33   0.16 
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      31   0.66 
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   2.7  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.5  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      28   8.1  

>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 41/64 (64%)
 Frame = +3

Query: 279 PIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
           PIFG+PL+++V++S   D   LP + R+ I Y++ +GL  + IYR    K K   L++L+
Sbjct: 97  PIFGIPLEKAVKQSILPDGVELPRLFREGIMYVEENGLNVEGIYRVSGVKSKVDALKELY 156

Query: 459 TDRG 470
            D+G
Sbjct: 157 -DQG 159



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +2

Query: 509 AMLKAFISELPESILTQELHGQFEQATAIAEPQREATMTNLIIS 640
           +++K ++ ELPES+LT  L  +F +   I + + +   T  +++
Sbjct: 174 SIVKQYLRELPESVLTMMLAPRFNELIGIQDKKEQLEKTKQLLA 217


>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 367

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +3

Query: 285 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 464
           FGVPL++ V +SR  D + +P V+   + YL   GLK + I+R   +    + L+  F  
Sbjct: 176 FGVPLEE-VTKSR--DGSPIPWVLAKIVHYLSQCGLKHEGIFRVSGNHKVVESLKATFDR 232

Query: 465 RG 470
            G
Sbjct: 233 DG 234


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 509 AMLKAFISELPESILTQELHGQFEQATAIAEPQREA 616
           ++LK F+ ELPE +LTQ  +  + Q T I+  Q  A
Sbjct: 114 SVLKQFLGELPEPLLTQAPYRAYLQVTEISNDQGNA 149


>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +3

Query: 342 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 458
           +P +V  +I++L+ +GL    I+RT   K + +Q+R+ F
Sbjct: 406 VPTIVNQAIEHLENYGLHVLGIFRTGGSKKRMKQMREQF 444


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 282 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 461
           +FGVP+   ++RS       LP  +  +I+YLQ   ++S  I+R    K +   L+ +  
Sbjct: 300 VFGVPMSVVLQRS----GQPLPRPILCAINYLQRTCVESVGIFRKSGGKQRINNLKDMME 355

Query: 462 D 464
           D
Sbjct: 356 D 356


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +2

Query: 359  RQHRLLTGTRIKI*RYIPDRTG*DKVSTTEEAVHGSRAYI 478
            R  R+LTG+R+ I R  PD    DK+S T+  +H  RA I
Sbjct: 1386 RDGRMLTGSRVAIGRQEPDCESHDKMS-TKCHLHVQRALI 1424


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 330  DDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 464
            + + +PL+VR  +  ++  GL+S  +YR   +  + ++LR  F +
Sbjct: 940  EQSSVPLLVRKCVLEIEKRGLESVGLYRISGNARRKKELRGFFDE 984


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,668,017
Number of Sequences: 59808
Number of extensions: 335939
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)