Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0251.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)         72   5e-13
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    35   0.088
SB_52676| Best HMM Match : DUF1610 (HMM E-Value=7.4)                   33   0.35 
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_7164| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)                 29   4.4  
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)            29   4.4  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_7238| Best HMM Match : rve (HMM E-Value=0.0017)                     29   5.8  
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
          Length = 223

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +3

Query: 315 SSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGPDQPVRIRTDV 494
           S++ L API+  +KI+C G+NY DHC EQN+  P  P++FSKF+S I  P  P+   T+ 
Sbjct: 16  SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIPTEPVIFSKFASAIAAPGDPIPYGTET 75

Query: 495 TKXVDG 512
               DG
Sbjct: 76  EVSCDG 81


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +3

Query: 288 STKPATIPLSSVTLTAPIHGVDKILC----IGLNYKDHCQEQNLTPP-PVPMVFSKFSST 452
           S K    P SSVT T P  G   +L      G + K+   E+  +PP P  +V   +S  
Sbjct: 68  SKKSGLAPASSVTATTPAPGKATVLSPSPYYGADLKEATSEEKPSPPTPGTLVAEPYSWK 127

Query: 453 IIGPDQPV-RIRTDVTK 500
            +   QPV RIRT  TK
Sbjct: 128 SLVTGQPVLRIRTTGTK 144


>SB_52676| Best HMM Match : DUF1610 (HMM E-Value=7.4)
          Length = 124

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +2

Query: 518 ELC-VVVGREAS--CVRERGTRWQHVGRGTPXAQDHQRQGT 631
           ++C ++VG+EA+  C R +G    H G+GT   +DH  +GT
Sbjct: 41  DMCGIIVGKEAAVMCGRGKGYVRDHCGKGTGYVRDHCGKGT 81


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 604  RAGPSAPRDXQKREEHWGSSC*GEVHG 684
            R GP AP + +K EEHW       +HG
Sbjct: 1174 RQGPLAPEELKKAEEHWIKKMQDTLHG 1200


>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 604 RAGPSAPRDXQKREEHWGSSC*GEVHG 684
           R GP AP + +K EEHW       +HG
Sbjct: 228 RQGPLAPEELKKAEEHWIKKMQDTLHG 254


>SB_7164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 604 RAGPSAPRDXQKREEHWGSSC*GEVHG 684
           R GP AP + +K EEHW       +HG
Sbjct: 117 RQGPLAPEELKKAEEHWIKKMQDTLHG 143


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/86 (22%), Positives = 40/86 (46%)
 Frame = +3

Query: 267 EKVKKLKSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPPPVPMVFSKFS 446
           ++ +   +T+P++    S+ LT  + G D  +  G N++  C E N   P    + S  +
Sbjct: 521 QRARYTSTTRPSSASSKSLLLTTLLLGGDIQINPGPNWRHPCGECN--KPKTKCIASWLT 578

Query: 447 STIIGPDQPVRIRTDVTKXVDGRWSC 524
           + + G  +PV  +  +T+ +     C
Sbjct: 579 ALVFGYARPVASQAFLTRYLKKSLDC 604


>SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)
          Length = 281

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 306 IPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 407
           +PL  +    P+  +DK+ C+ + YK+ C  Q+L
Sbjct: 4   VPLQKIVENRPL--LDKLRCLDIEYKEKCNWQHL 35


>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
          Length = 1451

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 494 NISSDPNRLIRSNDGA*KFTE--HHRH 420
           NIS+DP R ++ N G  K T   HH+H
Sbjct: 319 NISNDPGRALKQNTGEEKKTSNGHHKH 345



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 494  NISSDPNRLIRSNDGA*KFTE--HHRH 420
            NIS+DP R ++ N G  K T   HH+H
Sbjct: 1287 NISNDPGRALKQNTGEEKKTSNVHHKH 1313



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 494 NISSDPNRLIRSNDGA*KFTE--HHRH 420
           NIS+DP R  + N G  K T   HH+H
Sbjct: 836 NISNDPGRAFKQNTGEEKKTSNGHHKH 862


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 604  RAGPSAPRDXQKREEHWGSSC*GEVHG 684
            R GP  P + +K EEHW       +HG
Sbjct: 1368 RQGPLVPEELKKAEEHWIKKMQDTLHG 1394


>SB_7238| Best HMM Match : rve (HMM E-Value=0.0017)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 604 RAGPSAPRDXQKREEHW 654
           R GP AP + +K EEHW
Sbjct: 20  RQGPLAPEELKKAEEHW 36


>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 266 RKSEEVEINKTSNYTTIISHSNCTHTWCR*NPLYRLELQGSLPRAESHPTSC 421
           RK+ E+      + T+++   +C  TW R      +E   ++ RA+   T C
Sbjct: 732 RKASEIRTGSNPSPTSVLVCRSCGRTWLRALGFLVMERNANVHRADVMDTDC 783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,824,782
Number of Sequences: 59808
Number of extensions: 418991
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)