Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0229.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.087
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_2767| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       28   7.5  
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)                    27   9.9  

>SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -1

Query: 174 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFY--VHS---KLTIERDC 31
           N   N  N NK+  N+ +   N  DN +  NN H F+  VHS    L++E  C
Sbjct: 97  NNNNNNNNNNKNNNNNNNNNNNNSDNDNDNNNNHHFFDVVHSGVNALSVENRC 149


>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 174 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFYVHSKLTIERD 34
           N + N+ N  +  MN+ H  +NM+ N   +        H+ + + RD
Sbjct: 105 NMRHNDMNMRRDNMNTRHNDMNMRHNDMNMRYNDMNTRHNDMNMRRD 151



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -1

Query: 174 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFYVHSKLTIERD 34
           N + N+ N   + MN+ H  +NM+ N   ++       H+ + + RD
Sbjct: 161 NMRHNDMNMRYNDMNTRHNDMNMRHNDMNMSYNGMNTRHNDMNMRRD 207


>SB_2767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 96 TSQINNVHEFYVHSKLTIERDCT 28
          +++I N+ E+Y H +L IE+D T
Sbjct: 28 SNEIRNIREWYPHFRLDIEQDAT 50


>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 201 LPDRSVLIGNRKQ----NEQNKNKSKMNS*HTKLNMKDNTSQINNVHEF 67
           +PDR +L    K     N ++KN +  NS    L  K+NT    N HEF
Sbjct: 87  VPDRLILFDTYKTLYTANRKHKNTTDDNS--DVLQFKENTKAYLNTHEF 133


>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
          Length = 1764

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 364 RDSILW*FSQCPLVLFVAIS 305
           RD ++  FSQCPL LF+ IS
Sbjct: 685 RDLVMSAFSQCPLPLFLKIS 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,714,386
Number of Sequences: 59808
Number of extensions: 258945
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)