Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0225.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   5.7  
SB_59653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)                 28   7.5  
SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)                  28   7.5  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        28   7.5  
SB_11171| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-14)               28   7.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 322  QNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQSVQGQYNESEXKYSTKH 501
            + Q N  T   +++  +    KP S        P   +H+     +  +N    K+S +H
Sbjct: 798  KEQENGNTNDEEELEDMSMAEKPGSQSDNELNRPPQDRHRRHHHRRRHHNNKHRKHSREH 857

Query: 502  -RRKLSEFRSK*SDAQKS 552
             RR+      K +DAQ++
Sbjct: 858  SRRRHQRKHHKGNDAQET 875


>SB_59653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 355 QDISYLENISKPSSNVTELKQ----VPSSSKHQIEQSVQGQYNESEXKYSTKHRRKLSEF 522
           Q  + LEN+ K    +TE  +    +PSSS+HQ E +     NES      K +  + E 
Sbjct: 24  QSDTTLENLIKAFIAITEAPERGPDMPSSSQHQEEAASPTALNESLLSLLVKQKLAMQES 83

Query: 523 RS 528
            S
Sbjct: 84  AS 85


>SB_38318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 548 FWASDHLDLNSESFLRCFVEYFXSLSLYCPC 456
           FWA+ H D+  E ++R  ++Y   +S+Y  C
Sbjct: 86  FWAASHCDVPREKYIRELLKY-VPISVYGQC 115


>SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)
          Length = 1356

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 605 FCYLHATLQCNGYCHHDPDFWASDHL-DLNSESFLRCFVE 489
           FC++H TLQ         +F A+ H+ D NSE  L+ FVE
Sbjct: 828 FCFIHLTLQ---------EFLAAKHVTDTNSEEDLKSFVE 858


>SB_4810| Best HMM Match : NACHT (HMM E-Value=1.4e-09)
          Length = 682

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 605 FCYLHATLQCNGYCHHDPDFWASDHL-DLNSESFLRCFVE 489
           FC++H TLQ         +F A+ H+ D NSE  L+ FVE
Sbjct: 582 FCFIHLTLQ---------EFLAAKHVTDTNSEEDLKSFVE 612


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 322 QNQLNEATRHCQDISYLENISKPSSNVTELKQVPSSSKHQIEQ 450
           Q  L EA R  +++ Y +N+ +    +TE+K+      HQI+Q
Sbjct: 260 QQNLYEAVRSDRNL-YSKNLIESQDEITEMKRKLKIMNHQIDQ 301


>SB_11171| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-14)
          Length = 199

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +2

Query: 416 KYLHLQNIR*NKVYRDNITKAX*STLQNIGENFPSSDPSDQTPKSQDHDDNNRCTEV 586
           +YL   +++ +K  + +++    S +QNI +   S  PS+ +P ++D DD     E+
Sbjct: 90  RYLR-SHLKTHKGEQGSLSAEVDSIIQNIKDGPDSPAPSENSPSARDDDDEAVTAEI 145


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 366  ANILAMSGRFIQLILDATQSMSQVGDVDRDTGAYLYG 256
            A IL   G  + L+   T     +  +D+++GA++YG
Sbjct: 1814 AAILMGGGYSVMLVTMLTMVAEMINHIDKESGAFVYG 1850


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,810
Number of Sequences: 59808
Number of extensions: 384622
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)