Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0217.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                   101   5e-22
SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-19
SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)        36   0.050
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)              35   0.088
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score =  101 bits (243), Expect = 5e-22
 Identities = 41/65 (63%), Positives = 55/65 (84%)
 Frame = +2

Query: 290 TLSVPLGVVSRIEKVGGASSKGENSYGIEIFCKDMRNLRFAHRQENHSRRGIFEKLQQLA 469
           T+ VPLG + R+EK+GG +S+GEN+YG+EI+CKD RNLRFAH+QENHSRR I+E++   A
Sbjct: 36  TVEVPLGTIYRVEKIGGTTSRGENAYGLEIYCKDFRNLRFAHKQENHSRRLIYERIMHYA 95

Query: 470 FPLSH 484
           FP S+
Sbjct: 96  FPASN 100



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 183 RDVTYLCPYSGPTRGVLKVTNYQ 251
           +DVTYLCP++GP RG L +TNY+
Sbjct: 2   KDVTYLCPFTGPVRGFLYITNYK 24


>SB_18420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 37/56 (66%), Positives = 50/56 (89%)
 Frame = +2

Query: 290 TLSVPLGVVSRIEKVGGASSKGENSYGIEIFCKDMRNLRFAHRQENHSRRGIFEKL 457
           T+ VPLG + R+EK+GG +S+GEN+YG+EI+CKD RNLRFAH+QENHSRR I+E++
Sbjct: 85  TVEVPLGTIYRVEKIGGTTSRGENAYGLEIYCKDFRNLRFAHKQENHSRRLIYERI 140



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 21/38 (55%), Positives = 29/38 (76%)
 Frame = +3

Query: 138 GDIQLLDGEKVTSVARDVTYLCPYSGPTRGVLKVTNYQ 251
           G++ L  GEK  + A+DVTYLCP++GP RG L +TNY+
Sbjct: 36  GELALCKGEKPQATAKDVTYLCPFTGPVRGFLYITNYK 73


>SB_30585| Best HMM Match : Myotub-related (HMM E-Value=2.9e-17)
          Length = 488

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 596 RITRINDKYEVCDSYPSIWAVPSAADDDLLRSVA 697
           RI+ +N  Y VC SYP++  VP +  DD +  VA
Sbjct: 169 RISMVNYTYTVCRSYPAVVVVPQSISDDTVLRVA 202


>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
          Length = 550

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 572 WV*AMTCGRITRINDKYEVCDSYPSIWAVPSAADDDLLRSVATFRSRG 715
           W+  +TC     +N    VC +YP +  +PS+  D  L  VA+FR  G
Sbjct: 259 WLTELTC----HLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSG 302


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 500 QTSEVGVTEEKLAAAVFQIYHDVNDSLVCVQILSSSYP--YKKFLFHMSFHL 351
           + S + + E KL+    +   D+   + CV  L  +YP    +F+ H+ FHL
Sbjct: 684 ECSLIALVEAKLSPMATKGGKDIGKFITCVHRLQLNYPRIVDRFMKHIMFHL 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,830,986
Number of Sequences: 59808
Number of extensions: 527011
Number of successful extensions: 1245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)