Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0151
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018) 32 0.31
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30) 30 1.6
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 30 1.6
SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 3.8
SB_33658| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34) 28 5.0
SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011) 28 5.0
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
Length = 241
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 178 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 59
WLP H + F I L S S +FL F F+ GH +A N
Sbjct: 97 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 136
>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 178 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 59
WLP H + F I L S S +FL F F+ GH +A N
Sbjct: 252 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 291
>SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30)
Length = 321
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -1
Query: 595 SFAVTVSNSERYGGSSALADNDE-IPMWQSSLRETWSRGPVSVET*G--GVQ 449
S AV + S YGG S NDE P WQ L T S V + G GVQ
Sbjct: 144 SRAVDGNRSSAYGGGSCTHTNDEAAPWWQVDLGSTKSIAEVLIVARGDWGVQ 195
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 438 EPAHCTPPQVSTETGPRLQVSRNDDCHMGISSL 536
EPAH P ++TET P +Q D + SL
Sbjct: 393 EPAHLNPLPMTTETPPEIQAEMTKDTPQHVRSL 425
>SB_5696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 459 PQVSTETGPRLQVSRNDDCHMGISSLSARADEPPYRSEL 575
P+ ETGP L+ N DCHM + LSA + ++E+
Sbjct: 117 PRSPEETGPLLEPMPNADCHM--AKLSANSTVHDVKAEV 153
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 459 PQVSTETGPRLQVSRNDDCHMGISSLSARADEPPYRSEL 575
P+ ETGP L+ N DCHM + LSA + ++E+
Sbjct: 172 PRSPEETGPLLEPMPNADCHM--AKLSANSTVHDVKAEV 208
>SB_33658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
SF+EY T CT +L S T PY+L
Sbjct: 59 SFQEYATLCTLMLTCSVTKTAIPYLL 84
>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
Length = 403
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
SF+EY T CT +L S T PY+L
Sbjct: 181 SFQEYATLCTLMLTYSVTKTAIPYLL 206
>SB_13472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
SF+EY T CT +L S T PY+L
Sbjct: 59 SFQEYATLCTLMLTYSVTKTAIPYLL 84
>SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)
Length = 337
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 206 RFEKKCMDMTFKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGTRCYF 367
R+ K+ MD N K FR + T S SR G+P IL A C F
Sbjct: 284 RWLKQVMDKAGINT--KEFRPHSTRAASTSAASRQGIPLETILAAAGWSNECTF 335
>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 457 GVQCAGSQLYFHHVPH*VLQRNCLRVLGRQ--KVASRAAPCPY 335
G Q +Q+Y HHV +L+RN LG+Q K+A+ PY
Sbjct: 371 GAQGMKTQVYLHHVLRQLLRRN----LGQQALKIANTCTDLPY 409
>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 257 SFREYGTTCTSILMTSRTGMPPPYIL 334
SF+EY T CT +L S T PY+L
Sbjct: 59 SFQEYATLCTLMLTYSVTKTAIPYML 84
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 251 PKSFREYGTTCTSILMTSRTGMPPPYILVWARCG 352
PK + G T T L S TG+PPP I W + G
Sbjct: 382 PKGLLDIGATLT--LQCSATGVPPPRI-TWLKNG 412
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -1
Query: 271 ILSERFRRRIFKRHVHTLFFEPHVPRVIDPPWLPYHFIDFEIRIFL*SLTYSIVFLETFR 92
I ++ R I+ +H+ ++ H+ I + H D IR+ + + TY V+ T
Sbjct: 90 IYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTY--VYTSTIN 147
Query: 91 FY 86
Y
Sbjct: 148 TY 149
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +2
Query: 230 MTFKNATPKSFREYGTTCTSILMTSRTGMPPPYILVWARCGT--RCYFLPTKDPQAVSLE 403
M N P S +Y T + T+R P PY V A CG + P PQ
Sbjct: 642 MAGNNQPPTSTMQYQETTRQQMGTTRAYPPHPYAQVPAPCGNVQPQHGHPGMYPQHPQGS 701
Query: 404 YLMWHV 421
Y +HV
Sbjct: 702 YPQYHV 707
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,260,739
Number of Sequences: 59808
Number of extensions: 490287
Number of successful extensions: 1138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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