Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0128
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             29   2.7  
SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)                29   2.7  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   3.6  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   3.6  
SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)                   29   4.8  
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 29   4.8  
SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29)                   29   4.8  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     28   6.3  
SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)             28   8.4  
SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063)             28   8.4  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   28   8.4  

>SB_47241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +3

Query: 102 DNEIPRDIDDGK----ASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASKHQRW 269
           D +  +D DD      A+ V++   DY DD D    ++NV+ +L   AS   Y  KH   
Sbjct: 49  DYDEVKDNDDNNVGDLANGVVADENDYDDDCDNYDYLINVEGLLYMNASLWKYMEKH--- 105

Query: 270 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 371
            K  + S  +  +S ++ + P   +T  Q    P
Sbjct: 106 -KVKQDSKAFQLLSKLLVMDPNKRITSEQALQDP 138


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
 Frame = +3

Query: 102 DNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILN------VQEILKDMASQGDYASKHQ 263
           D EI R+ D   A SV   +   VD +D S  I+        Q  L    S G Y    Q
Sbjct: 80  DTEINREYDFSGAKSVKKTSITLVDYSDGSNKIVENTKTDLPQSGLLGKISSGSYVGGRQ 139

Query: 264 RWPKPPELSPIYLPVSPVMPVQP 332
             P P   SP     +   PV P
Sbjct: 140 ALPPPSRWSPHITHKNETQPVGP 162


>SB_37123| Best HMM Match : Extensin_2 (HMM E-Value=1.5)
          Length = 318

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 309 SPVMPVQPLTSLTLTQTA--SGPETSPASDNLSVPSSDTWD 425
           SP+   Q  +S  LTQT   S    +   DNLS P + TWD
Sbjct: 178 SPLTQTQDNSSSPLTQTQDISSSPLNQTWDNLSCPLTQTWD 218


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 VAQTAGIIAHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPF 409
           VAQ AG IA LSA   G+A     +IN   + V S N     Q +G F
Sbjct: 364 VAQLAGSIAELSAYHHGEASLMGTIINLAENFVGSNNI-NLLQPVGQF 410


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 51   VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI 218
            V++ AY A  VTI +YSD      I++ + S      W+  DD   ++  LN+ ++
Sbjct: 2786 VSSKAYGA-RVTIGKYSDRAGKAAIENVEFSLCGQEGWNDWDDPRYALTYLNLDDV 2840


>SB_36300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 78  SVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQE-ILKDMASQGDYAS 254
           +VT   +SD +  +   D KA+++ S    YV++    +   N+QE IL D  ++G+  S
Sbjct: 15  AVTSVDFSDPQGGKGACDRKAATIKSHIRQYVNEGHDVVTAANLQEAILADGGARGEGIS 74

Query: 255 KHQRW 269
           +  ++
Sbjct: 75  EFNKF 79


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 306  VSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 413
            V+P       T + +T+TA+GPET+ AS+    P +
Sbjct: 1370 VAPKSTTLASTVVPITETAAGPETTLASETTMAPKT 1405


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 445 STRHQPWSTPILCRTSP 495
           + +H PW+TP++ RT P
Sbjct: 536 TVKHGPWNTPVVARTKP 552


>SB_19312| Best HMM Match : DEP (HMM E-Value=2.5e-09)
          Length = 678

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 207 VQEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTAS 365
           +++ LKD   QGD+         PP + P +L     + + PLTS TL   AS
Sbjct: 278 MEQQLKDF--QGDWVEIAFTQYAPPSVIPAFLAPDSALEMIPLTSPTLRSLAS 328


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 439 YQSTRHQPWSTPILCRTSPGLCRSGRIYDFEAAWDAILASSDSSFLNEEYCIVKRLYNSR 618
           Y+S  +  W  P    T   L    R  D  ++   +LAS      + +  ++  L++ R
Sbjct: 500 YKSPYNYKWMIPFTYVTDQQLQAQNRWMDRNSSKSRVLASLHHYRNSSKSRVLASLHHYR 559

Query: 619 N-SQSNNIAGLHH 654
           N S+S  +A LHH
Sbjct: 560 NSSKSRVLASLHH 572


>SB_56403| Best HMM Match : fn3 (HMM E-Value=1.5e-29)
          Length = 236

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 445 STRHQPWSTPILCRTSP 495
           + +H PW+TP++ RT P
Sbjct: 218 TVKHGPWNTPVVARTKP 234


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = +1

Query: 391 TISRSLLRTRGTKLESYQSTRHQP------WSTPILCRTSPGLCRSGRIYDFEAAWDAIL 552
           T+S  L  +RG +LE +   R +P      +ST I  R+      +G     + A++  L
Sbjct: 87  TVSIKLFPSRGKRLEVFIGARERPLPWNSNYSTIIPDRSKCARTSAGLFNCRKDAYEVQL 146

Query: 553 ASSDSSFLNEEYCIVKRLYNSRNSQSNNIAGLHHR 657
           +S+ + F+   +  ++    SR  +S    G  HR
Sbjct: 147 SSNLTGFIGVHFIGIRYFVQSRGRRSLCGEGKRHR 181


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 210 QEILKDMASQGDYASKHQRWPKPPELSP--IYLPVSPVMPVQPLTSLTL-TQTASG-PET 377
           +++LK    +  + +KH RW    E  P   Y+ +  + P    T  ++ +QT +G P+T
Sbjct: 64  EQVLKPCKGRTTWGAKHDRWDSSQETDPGASYILLWDIHPAGEFTRFSIQSQTTAGRPKT 123


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 249  ASKHQRWPKPPELSPIYLPVSPVMPVQPLTSL 344
            A   Q+ P+PP+ + I  P  P M  QP++SL
Sbjct: 970  AGAPQQTPQPPQPAQIMRPAHPQMISQPVSSL 1001


>SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)
          Length = 257

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 487 SDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSGCT-GITG 311
           +D   E+T+  DE+ID    ++  +++ T+R  E  + +  D +  R   ++  T  IT 
Sbjct: 80  TDSTGEITKTKDEIIDSTDEITDRTDKITDRTGEITDRT--DKITDRTGKITDSTVEITD 137

Query: 310 DTG 302
            TG
Sbjct: 138 STG 140


>SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 487 SDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCVRVNDVSGCT-GITG 311
           +D   E+T+  DE+ID    ++  +++ T+R  E  + +  D +  R   ++  T  IT 
Sbjct: 61  TDSTGEITKTKDEIIDSTDEITDRTDKITDRTGEITDRT--DKITDRTGKITDSTVEITD 118

Query: 310 DTG 302
            TG
Sbjct: 119 STG 121


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 180 CHR-RSPMHVRLRN*LFHHQCRVEFHYH 100
           CHR R   H+RL   L +H+ R+  H+H
Sbjct: 440 CHRPRLSNHLRLSRHLHYHRRRLSIHHH 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,181,891
Number of Sequences: 59808
Number of extensions: 444792
Number of successful extensions: 1783
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)