Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0122
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.2  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   7.4  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               26   9.8  

>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 118 WHWGSVDSISGSRXRFXLSXNSGRKHSR 201
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 155 REPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 33
           REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 58  REPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 118 WHWGSVDSISGSRXRFXLSXNSGRKHSRCCTSILR 222
           + W  VDSI+ S+ +F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,050,166
Number of Sequences: 59808
Number of extensions: 130545
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)