Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0114
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 31 0.40
SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6) 27 6.5
SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7) 27 8.6
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_5098| Best HMM Match : Pox_A14 (HMM E-Value=6.7) 27 8.6
>SB_29327| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
Length = 349
Score = 31.5 bits (68), Expect = 0.40
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 223 IRDGKYFIAAVDVE-NQKYRETHWNATNTSKMRMSNSPRAVRDCVASSK*MGRE*CKPEG 399
+ GK+ +A +VE N+K E H + +++R N+ A+ D + RE C
Sbjct: 9 VEQGKFLVAGEEVERNEKMAERHKTEASATRIRKENANAALAD----RRRKTRENCNNNH 64
Query: 400 NLAN------CSPVNHGRGNKTGQILVL 465
N N C+ NH NK + +
Sbjct: 65 NNNNNNISSDCNISNHDNNNKNDAAIAI 92
>SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 119 SADRAGKTRQHNINNAPNCFPCCIL 45
SA+ K R H+ N +CF CCIL
Sbjct: 279 SANDKKKKRLHDSANQKSCFTCCIL 303
>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1593
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 214 RCEIRDGKYFIAAVDVENQKYRETHWNATNTSK 312
+C I G+Y+I + Q++R WNA +T++
Sbjct: 497 QCNIIHGRYYIFHHKKDVQRHRYLVWNANDTTR 529
>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +3
Query: 252 CGCRKPKIPGNALECHEYIEDENVEFPTCCARLRC 356
C +KP +P + HE + + C R RC
Sbjct: 28 CLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 483 ESR*SRQHQDLARFVAPPMVYRGT--VRKVALWFALFSPHL 367
ES + D A+ ++P + GT +R V+ W+ ++ PH+
Sbjct: 2321 ESSSPQSPNDTAQIISPVVSGNGTKVIRCVSFWYHMYGPHV 2361
>SB_35270| Best HMM Match : Jacalin (HMM E-Value=8.6)
Length = 211
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 121 DVSYQACVDKYSRKGYQPWQEWSDHYT 201
D SY D+ GY WQ W+D +T
Sbjct: 144 DGSYPKPHDEALEAGYDSWQAWADAWT 170
>SB_25269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -3
Query: 491 CLLNPANPDNTRIWPVLLPLPWFTGEQFARLPSGLHYSLPIYFDDATQSRTAR 333
C +P + R + W TG + LP+ H ++P+ DD + + R
Sbjct: 230 CAFHPLKVPSRRTVARYVVAVWLTGLVLSLLPAIAHNTIPVDIDDESYTMLCR 282
>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 272 NTGKRTGMPRIHRR*ECRIPHVLCAIA 352
+ GK G IH R +CR P LC +A
Sbjct: 373 SNGKLMGTIDIHSRRKCRNPRSLCVVA 399
>SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)
Length = 363
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 472 IPTTPGFGPFCCPSHGLPGNSSQ 404
+P PGF P P HG SSQ
Sbjct: 74 LPAPPGFAPIPVPGHGGAAASSQ 96
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +3
Query: 240 LHSCCGCRKPKIPGNA----LECHEYIEDENVEFPTCCARLRCVVEVNGERIV 386
L++C GCRK G+ L C + N E T CA +E+ R V
Sbjct: 1478 LYNCAGCRKTLYSGSTCQTELYCMRWDTLSNREVHTVCADPDSEIEIISNRTV 1530
>SB_5098| Best HMM Match : Pox_A14 (HMM E-Value=6.7)
Length = 160
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/81 (17%), Positives = 32/81 (39%)
Frame = +1
Query: 76 LFMLCCLVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKYFIAAV 255
+F +C + DVS+ + ++ KG+ ++E + + +I G Y +
Sbjct: 1 MFYICSEQASLVFTGDVSFGGAIRYFAEKGFYDYKETLTKVATYLQQADIAIGNYESPFI 60
Query: 256 DVENQKYRETHWNATNTSKMR 318
+ +E W + +R
Sbjct: 61 Q-RKDEVKENRWKTDDAVTLR 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,610,669
Number of Sequences: 59808
Number of extensions: 395928
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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