Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0113
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 113 9e-26
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 32 0.27
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24) 28 4.4
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 5.8
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_20529| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 8.4
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 113 bits (272), Expect = 9e-26
Identities = 48/54 (88%), Positives = 50/54 (92%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAPTKPWRRWHRRV 417
TSAESWGTGRAVARIPRVRG GTHRSG GAFGNMCRGGRMFAPTK WR+WH +V
Sbjct: 59 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKV 112
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/59 (57%), Positives = 44/59 (74%)
Frame = +2
Query: 80 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 256
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQ
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQ 58
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 367 HHDTCYRRHXDRTYGYHXHGHAEFGQQHVRYPMIRHW 257
HH CY H Y Y+ H H + + H YP RH+
Sbjct: 20 HHYCCYCHHR---YCYYRHHHYCWYRHHYHYPCYRHY 53
>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1725
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 146 PFVFKAPIRPDLVNDVHVSMSKNSRQ--PYCVSKEAGHQPVPNHGVPDVLLP 295
PF F P+R +L+N++H+ ++ ++ + P+ G Q V N GV +P
Sbjct: 1264 PFYF--PLRLELINEIHLYITDDTGRTIPFLSGGFEGSQQVANPGVGLFTMP 1313
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 147 GRGLAAPCTVSLFSEYTDTKGRATDRLI 64
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 178 PGQ*CSRFYVQELEAALLREQG-GWSPTSAESWGTGRAVARIPRVRGXGT 324
P Q C + E+ +L G G P AE G ARI +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 371 RPPRHMLPKAP*PDLWVPXPRTRGIRATARPVPHD 267
RPP H + P PD WVP P R +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 280 GRAVARIPRVRGXGTHRSGXGAFGNMCR 363
GR V RV+G GT G G G CR
Sbjct: 214 GRVVRDAGRVKGCGTCGKGCGTCGKRCR 241
>SB_58837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 392 PGGAGTVASNLRQRRXAFGSNRCCY-WRPSARFKAKKDTFLKKIPEAFP 535
P G V NLR + + Y WRP A + AKK L K P P
Sbjct: 347 PSGVKLVERNLRYGE--WRHKKTWYGWRPEAAWDAKKSGSLAKEPSTVP 393
>SB_20529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 24.2 bits (50), Expect(2) = 8.4
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +2
Query: 74 SVARPLVSVYSEKSETVQGAAKPLP----FVFKAPIRPDLVNDVHVSMSKNSRQP----Y 229
S A P ++Y + ++G P+P F F I N V ++ ++ R+P
Sbjct: 250 STASPGETLYVAVPKLLEGVT-PVPGSLRFGFDLSISGQANNTVVNNVGRSRREPPENLV 308
Query: 230 CVSKEAGHQPVP 265
C GHQP+P
Sbjct: 309 CRRNAPGHQPLP 320
Score = 21.4 bits (43), Expect(2) = 8.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 386 RSPGGAGTVASNLRQRRXAFG 448
R P GAG + N+R+ R G
Sbjct: 329 RGPPGAGIKSENMRKLRSKAG 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,794
Number of Sequences: 59808
Number of extensions: 359780
Number of successful extensions: 990
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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