Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0110
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)                30   2.1  
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)                       29   3.6  
SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)           29   4.8  
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     28   6.3  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     28   8.4  

>SB_28623| Best HMM Match : Peptidase_M8 (HMM E-Value=0)
          Length = 654

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 487 TTSKLSTSLC--RIFPKXCPARMTYEVSRLPXGSSCGDRRPSLFAETWSXPXAGPM 648
           T SKLS +LC  R +P+  P    Y  S LP  SS    R ++FA+T S   A P+
Sbjct: 419 THSKLSIALCNLRKYPQPLPPEYQY-FSHLPKESS-RKTREAVFADTDSYGGAVPL 472


>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
          Length = 294

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -1

Query: 593 SPQLLPXGSRLTSYVIRAGQX-LGNILHRLVESLEVVHASPTKQ*FSRPTPTKRHQLQVH 417
           SP++   GS L    I+ G   LG  LHR    + V H S  +   SR   T  H   V 
Sbjct: 198 SPRMRRAGSLLR---IQCGCFALGVTLHR-DSKVRVYHRSLIRTGCSRRVITAWHMRVVP 253

Query: 416 VADCPEPDGSALQHHRRPSVHLDPIR 339
                +PD  A Q  + P  HLD IR
Sbjct: 254 PVTPLKPDRFAAQLIKHPDQHLDGIR 279


>SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 243 LLYCYSNFLLNSF--WAKLCLRTPVQNLLS 160
           LL  +S +  NSF  W+ LC  +P+ +LLS
Sbjct: 90  LLIIHSYYTFNSFVAWSSLCTLSPISDLLS 119


>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 437 RHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTDLLV 276
           +H+L VH+  C   DGSA +  RR   H +  R     +R   ++LLD T +L+
Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 551 HTKSVDYRWGAAVEIEGHRSLXRLGHXXXPGPXPLCTLI 667
           H K+  Y+     EI  H  L   G    P P P+CT++
Sbjct: 381 HKKNASYQDALDHEIRKHELLKHRGPLGKPLPAPVCTVM 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,744,297
Number of Sequences: 59808
Number of extensions: 433803
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)