Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0048
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 69 3e-12
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 4.9
SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035) 27 8.6
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 68.5 bits (160), Expect = 3e-12
Identities = 33/67 (49%), Positives = 39/67 (58%)
Frame = -2
Query: 450 DITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTIFMGVNI 271
D+ +HDTYYVVAHFHYVLS + TG N KI F+ +F+GVNI
Sbjct: 68 DVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNI 127
Query: 270 TFFPQLF 250
TFFPQ F
Sbjct: 128 TFFPQHF 134
Score = 40.3 bits (90), Expect = 9e-04
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Frame = -1
Query: 319 LYTKNSIFYNIYGSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + G F FLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 139 XXXXXXXXXINQ-RINLFXLNLPS---SIE*YQNLPPAEHSYNELPIL 8
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = -3
Query: 497 FTVGGLTGVILANSS 453
FT+GGLTGVILANSS
Sbjct: 52 FTIGGLTGVILANSS 66
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 40.3 bits (90), Expect = 9e-04
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Frame = -1
Query: 319 LYTKNSIFYNIYGSKYNIFSTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 140
LY K + G F FLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 139 XXXXXXXXXINQ-RINLFXLNLPS---SIE*YQNLPPAEHSYNELPIL 8
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = -2
Query: 339 TGLSLNSYILKIQFFTIFMGVNITFFPQLF 250
TG N KI F+ +F+GVNITFFPQ F
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFXLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFXLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFXLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFXLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFXLNL 77
FLGLAG PRRYSD+ D + + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 76 PS---SIE*YQNLPPAEHSYNELPIL 8
S S+E Q PPA H+YNELP +
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -1
Query: 253 FLGLAGIPRRYSDYPD 206
FLGLAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 81 ISHHQLNDIKIYHQQNIHIMNYQF 10
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
>SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)
Length = 428
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/56 (21%), Positives = 25/56 (44%)
Frame = -1
Query: 379 CNYWGIY*LISFIYRPFIKFLYTKNSIFYNIYGSKYNIFSTTFLGLAGIPRRYSDY 212
C+ W I + P+++++Y + Y I+G ++ IF + Y +Y
Sbjct: 308 CHIWSTLCHIWSTFMPYLEYVYGIFGVRYAIFGVRFAIFGVRLCHIWSTFMPYLEY 363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,966,191
Number of Sequences: 59808
Number of extensions: 142654
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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