Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0047
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)                  38   0.010
SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)              33   0.16 
SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4)             33   0.16 
SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)              33   0.16 
SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)               33   0.16 
SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       33   0.16 
SB_57848| Best HMM Match : Ribosomal_L30_N (HMM E-Value=5.4)           33   0.16 
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)           33   0.16 
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)                     33   0.16 
SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)             33   0.16 
SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)              33   0.16 
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)              32   0.37 
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                 31   0.65 
SB_29813| Best HMM Match : Dynein_heavy (HMM E-Value=0)                31   0.86 
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          31   0.86 
SB_13210| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.2)                29   2.6  

>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
          Length = 332

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 28/73 (38%), Positives = 37/73 (50%)
 Frame = +1

Query: 319 ENYEGLENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVL 498
           E    LE  K+R+++ +     K   L    KAL N  AN+R E+EK    E LA   V 
Sbjct: 78  ERIHVLEEEKKRLEEELASVKYKLTALESEVKALSN--ANDRQEEEKQKLAEKLAL--VE 133

Query: 499 SVIQSRKEEISGS 537
           S +QS KEE+  S
Sbjct: 134 SKVQSFKEELDDS 146


>SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 482 RLEMF*ALSNHVKKKLAAVTYFKYYGPCRTIVRQHQDAHALYFIVSGEV 628
           R++ F     +VK++LA V Y+  Y   R I++Q     + YFIVSG V
Sbjct: 160 RMKGFQRYPMYVKRELAKVLYYDVYEQDRVIIKQGHIGVSFYFIVSGSV 208


>SB_45878| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
          Length = 184

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 103 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 162

Query: 517 KEE 525
           K +
Sbjct: 163 KRK 165


>SB_34656| Best HMM Match : Ribosomal_L30_N (HMM E-Value=4)
          Length = 184

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 103 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 162

Query: 517 KEE 525
           K +
Sbjct: 163 KRK 165


>SB_6955| Best HMM Match : Borrelia_orfA (HMM E-Value=2.1)
          Length = 530

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 446 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 505

Query: 517 KEE 525
           K +
Sbjct: 506 KRK 508


>SB_1448| Best HMM Match : Sec8_exocyst (HMM E-Value=2.7)
          Length = 166

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 85  ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 144

Query: 517 KEE 525
           K +
Sbjct: 145 KRK 147


>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 437 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 496

Query: 517 KEE 525
           K +
Sbjct: 497 KRK 499


>SB_57848| Best HMM Match : Ribosomal_L30_N (HMM E-Value=5.4)
          Length = 184

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 103 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 162

Query: 517 KEE 525
           K +
Sbjct: 163 KRK 165


>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
          Length = 623

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 546 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 605

Query: 517 KEE 525
           K +
Sbjct: 606 KRK 608


>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
          Length = 934

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337  ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
            E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 853  ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 912

Query: 517  KEE 525
            K +
Sbjct: 913  KRK 915


>SB_16936| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
          Length = 399

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 318 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 377

Query: 517 KEE 525
           K +
Sbjct: 378 KRK 380


>SB_9961| Best HMM Match : Borrelia_orfA (HMM E-Value=2.3)
          Length = 358

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 277 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 336

Query: 517 KEE 525
           K +
Sbjct: 337 KRK 339


>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
          Length = 725

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSR 516
           E++K++V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L V    
Sbjct: 644 ESLKKKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRVKSKE 703

Query: 517 KEE 525
           K +
Sbjct: 704 KRK 706


>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 1582

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 337 ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQS 513
           E++KR+V++ ++   KKKQ L     ALL +  +  T  E      +LA  N L   Q+
Sbjct: 169 ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSILAKSNALRYKQA 227


>SB_29813| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 659

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +1

Query: 385 KKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSVIQSRKEEISGSDVLQILRPV 564
           KKQL  I DK L    ++E    E  T I++L++  VLS   S K+EI+ +   +I    
Sbjct: 117 KKQLKEIEDKILEVLSSSEGNILEDETAIKVLSSSKVLSEEISAKQEIATATEKEIDETR 176

Query: 565 SDYRTSA 585
           + Y+  A
Sbjct: 177 NGYKPVA 183


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 337  ENVKRRVQQAMRGKPKKKQLLSINDKALLNKPANERTEQEKNTYIELLAA*NVLSV 504
            E++KR+V++ ++   KKKQ L     ALL +  +  T  E       LA  N L V
Sbjct: 838  ESLKRKVEEDIKQAKKKKQKLETTATALLKEADDLATNAEMKGDFSTLAKSNALRV 893


>SB_13210| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.2)
          Length = 478

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 421 LNKPANERTEQEKNTYIELLAA*NVLSVIQSRKEEISGSDVLQILRPVSDYRTSAPRCP 597
           L KP++ RTE +K  Y++ +++ N  +   SR+  ++    LQ  RP    RT  P  P
Sbjct: 126 LAKPSSYRTENQKRWYLQPVSSSNQRNPGASRQGFVNQKQWLQNSRPF--VRTGVPYTP 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,913
Number of Sequences: 59808
Number of extensions: 338922
Number of successful extensions: 705
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)