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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0009
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)                28   6.3  
SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)              28   8.4  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 262  ETGENRQFIHINEPPIIVQEHDSQPQE 342
            E GE  Q  HIN   I+V E    PQE
Sbjct: 1139 EVGEELQIFHINPGSIVVTELPPSPQE 1165


>SB_14075| Best HMM Match : zf-CCHC (HMM E-Value=0.0033)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 443 KKHYGMTLAS-HVGTTADECCKKTEI*GELILGS*KRIG*AKKSKWVLIIHVK 598
           K H+ +   S H+ T  D   K+TE   +L LG  ++    KKS W++   V+
Sbjct: 140 KNHFQVLCRSKHIETVYDNTQKETEKDRDLFLGVIQKTHETKKSDWLIQAQVE 192


>SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)
          Length = 208

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 467 ASHVGTTADECCKKTEI*GELILGS*KRIG*AKKSKWVLIIHVKKFSKSVNH 622
           A HV   +D    K  + GEL  GS K  G  K+ K  +  H+K F+  V H
Sbjct: 149 AGHVCRMSDSRIPKQLLYGELSRGSRKVGGQRKRYKDCIKSHLKDFNIDVQH 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,111,789
Number of Sequences: 59808
Number of extensions: 383917
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).