Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30120.Seq
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5) 46 3e-05
SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51) 46 3e-05
SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42) 29 3.6
SB_16259| Best HMM Match : AAA (HMM E-Value=0.43) 28 6.3
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 28 6.3
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_44893| Best HMM Match : FGGY_C (HMM E-Value=2.5)
Length = 85
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -2
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_34143| Best HMM Match : FGGY_C (HMM E-Value=0.51)
Length = 137
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -2
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 25 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 62
>SB_17612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = -2
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRA--MRVW 402
+Q+QAD+LGI V RP M E+TALGAA+ AG A + VW
Sbjct: 436 MQLQADILGISVERPTMPETTALGAAMAAGAAKGIEVW 473
>SB_21449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 509 VQMQADLLGIPVIRPLMMESTALGAAIVAGRAMRVW 402
+++ + L G + RP + + LGAA +AG A VW
Sbjct: 21 MELTSSLTGQSMDRPSQTDMSVLGAAFLAGMATGVW 56
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 363 QECIGRW--AGYCRGPHTHCATC 425
QEC+GRW A + RG H C C
Sbjct: 26 QECLGRWNVAQFFRGRHPTCPHC 48
>SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)
Length = 355
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 575 AAXLRAPEATPRRRRDGAELSSVQMQADLLGIPVIR 468
A+ +R PEATP + DG ++ + +Q+ + VI+
Sbjct: 164 ASLMRMPEATPGIQIDGVDICGLNLQSTRQAVSVIQ 199
>SB_16259| Best HMM Match : AAA (HMM E-Value=0.43)
Length = 538
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 543 SPTEGWRRTQFCADAG*FTGYTSHSSPHDGKYSPGGGHCRRSRNACVAHD 394
SP G+R T F G T + +S H + S G RNACV+ D
Sbjct: 484 SPYLGFRSTSF-TPLG--TAFAYMASVHTRRTSSRGNRLNMRRNACVSQD 530
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 502 CRLIYWVYQSFVPS*WKVQPWGRPLSQVAQCVCGPRQYPAHRPIHSCRLLPMKNEKCGEF 323
CR + +Q VP+ + Q WG + + +C +Q R H +LL + +CGE+
Sbjct: 290 CRQVAVYHQRGVPT-LEEQEWGVGVVEEYKCPTCSQQIRFPRYNHPAKLLETRCGRCGEW 348
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 385 LGIVVGHTRIARPATMAAPRAVLSIMRGRMTGI 483
+G+ + HTR+A + A VLSI R R+ G+
Sbjct: 1618 VGLSIHHTRLADVSIHHARLGVLSIHRSRLVGL 1650
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 351 GKSRQECIGRWAGYCRGPHTHCAT 422
G + Q C G AGYC P HC T
Sbjct: 751 GSAAQHC-GTNAGYCGIPSNHCGT 773
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 387 GYCRGPHTHCATCDNGRPQGCTFHHEG 467
G C+ C TC P+ CTF +G
Sbjct: 470 GICKSCDPGCTTCSTSDPKKCTFCAKG 496
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,667,946
Number of Sequences: 59808
Number of extensions: 401481
Number of successful extensions: 895
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -